Variant report

Variant	rs11803730
Chromosome Location	chr1:215039195-215039196
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11807086	0.82[AMR][1000 genomes]
rs11811352	0.82[AMR][1000 genomes]
rs17042163	0.91[YRI][hapmap]
rs72761541	0.82[AMR][1000 genomes]
rs7524002	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7527056	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873167	chr1:214950361-215116947	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv873168	chr1:214962771-215064388	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215037800-215039400	Enhancers	HMEC	breast
2	chr1:215037800-215039600	Enhancers	Muscle Satellite Cultured Cells	--
3	chr1:215038000-215039200	Enhancers	NHEK	skin
4	chr1:215038000-215039800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:215038200-215039200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr1:215038200-215039200	Enhancers	NHDF-Ad	bronchial
7	chr1:215038200-215039400	Enhancers	A549	lung
8	chr1:215038200-215039400	Enhancers	Osteobl	bone
9	chr1:215038600-215039200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr1:215038800-215039200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr1:215038800-215039200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr1:215038800-215039800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr1:215039000-215039600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links