Variant report

Variant	rs7524002
Chromosome Location	chr1:215036966-215036967
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11803730	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11807086	0.82[AMR][1000 genomes]
rs11811352	0.82[AMR][1000 genomes]
rs17042163	0.91[YRI][hapmap]
rs72761541	0.82[AMR][1000 genomes]
rs7527056	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873167	chr1:214950361-215116947	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv873168	chr1:214962771-215064388	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215034800-215037000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr1:215034800-215037000	Enhancers	NHDF-Ad	bronchial
3	chr1:215035200-215037000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr1:215035600-215037800	Weak transcription	HMEC	breast
5	chr1:215035800-215038800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr1:215036200-215038000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr1:215036200-215038600	Weak transcription	HSMM	muscle
8	chr1:215036600-215038200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:215036800-215037800	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr1:215036800-215038000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr1:215036800-215038200	Weak transcription	Osteobl	bone
12	chr1:215036800-215038800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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