Variant report

Variant	rs11803885
Chromosome Location	chr1:94500973-94500974
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17110885	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs17110889	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs17110891	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17110905	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17110916	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17389488	0.89[EUR][1000 genomes]
rs17389899	0.97[EUR][1000 genomes]
rs41292681	0.95[EUR][1000 genomes]
rs56253197	0.97[EUR][1000 genomes]
rs56307710	0.89[EUR][1000 genomes]
rs7543524	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516137	chr1:94404238-94504545	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94488200-94505000	Weak transcription	Spleen	Spleen
2	chr1:94488600-94502600	Weak transcription	Right Atrium	heart
3	chr1:94492200-94510000	Weak transcription	Aorta	Aorta
4	chr1:94496800-94508400	Weak transcription	Gastric	stomach
5	chr1:94497200-94505000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr1:94497400-94505000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr1:94497600-94503400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr1:94497600-94505000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr1:94497600-94505200	Weak transcription	Lung	lung
10	chr1:94499000-94501600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr1:94499200-94502600	Enhancers	Muscle Satellite Cultured Cells	--
12	chr1:94499400-94502200	Weak transcription	GM12878-XiMat	blood
13	chr1:94499600-94502600	Weak transcription	HSMMtube	muscle
14	chr1:94500000-94502800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr1:94500200-94502600	Weak transcription	HUVEC	blood vessel
16	chr1:94500400-94501400	Weak transcription	Hela-S3	cervix
17	chr1:94500400-94502200	Weak transcription	HepG2	liver
18	chr1:94500800-94501600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr1:94500800-94502600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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