Variant report

Variant	rs17389899
Chromosome Location	chr1:94498295-94498296
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11803885	0.97[EUR][1000 genomes]
rs17110885	1.00[EUR][1000 genomes]
rs17110889	1.00[EUR][1000 genomes]
rs17110891	0.97[EUR][1000 genomes]
rs17110905	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17110916	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17389488	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs41292681	0.97[EUR][1000 genomes]
rs56253197	0.95[EUR][1000 genomes]
rs56307710	0.92[EUR][1000 genomes]
rs7543524	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516137	chr1:94404238-94504545	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94488200-94505000	Weak transcription	Spleen	Spleen
2	chr1:94488600-94502600	Weak transcription	Right Atrium	heart
3	chr1:94491400-94499000	Enhancers	HepG2	liver
4	chr1:94492200-94510000	Weak transcription	Aorta	Aorta
5	chr1:94492800-94498600	Weak transcription	GM12878-XiMat	blood
6	chr1:94496000-94500800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr1:94496800-94508400	Weak transcription	Gastric	stomach
8	chr1:94497000-94499000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr1:94497200-94499200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr1:94497200-94505000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr1:94497400-94505000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr1:94497600-94499200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr1:94497600-94499200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr1:94497600-94503400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr1:94497600-94505000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr1:94497600-94505200	Weak transcription	Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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