Variant report

Variant	rs11805538
Chromosome Location	chr1:158323733-158323734
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11801650	0.89[AFR][1000 genomes]
rs11801964	0.80[AFR][1000 genomes]
rs11804278	0.88[AFR][1000 genomes]
rs11804812	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11809955	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11810029	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61734681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012003	1.00[AMR][1000 genomes]
rs73012022	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73027868	0.94[AFR][1000 genomes]
rs73027869	0.94[AFR][1000 genomes]
rs73027896	1.00[AMR][1000 genomes]
rs73027898	1.00[AMR][1000 genomes]
rs73027900	0.95[AFR][1000 genomes]
rs73029705	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999542	chr1:158015715-158368132	Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv872479	chr1:158118787-158484285	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv872480	chr1:158153526-158450238	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv831692	chr1:158223459-158392016	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv998569	chr1:158317392-158443389	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1010608	chr1:158322815-158353465	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158322600-158324000	Flanking Active TSS	Fetal Thymus	thymus
2	chr1:158322800-158324600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr1:158322800-158326600	Flanking Active TSS	Dnd41	blood
4	chr1:158322800-158328400	Active TSS	Thymus	Thymus
5	chr1:158323000-158324600	Enhancers	Primary T cells from cord blood	blood
6	chr1:158323200-158324200	Enhancers	Primary hematopoietic stem cells	blood
7	chr1:158323200-158324800	Enhancers	Primary B cells from peripheral blood	blood
8	chr1:158323400-158323800	Enhancers	GM12878-XiMat	blood
9	chr1:158323400-158324200	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr1:158323600-158323800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
11	chr1:158323600-158324000	Enhancers	Adipose Nuclei	Adipose
12	chr1:158323600-158324000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
13	chr1:158323600-158324200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr1:158323600-158324600	Enhancers	Primary B cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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