Variant report

Variant	rs73027868
Chromosome Location	chr1:158303547-158303548
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11801650	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11801964	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11804278	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11804812	0.94[AFR][1000 genomes]
rs11805538	0.94[AFR][1000 genomes]
rs11809955	0.94[AFR][1000 genomes]
rs11810029	0.93[AFR][1000 genomes]
rs61734681	0.94[AFR][1000 genomes]
rs73012022	0.94[AFR][1000 genomes]
rs73027869	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73027900	0.94[AFR][1000 genomes]
rs73029705	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999542	chr1:158015715-158368132	Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv872479	chr1:158118787-158484285	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv872480	chr1:158153526-158450238	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv831692	chr1:158223459-158392016	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158301400-158304200	Active TSS	Thymus	Thymus
2	chr1:158302000-158305200	Flanking Active TSS	Dnd41	blood
3	chr1:158302400-158304600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr1:158302400-158304600	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr1:158302800-158306800	Enhancers	Primary B cells from peripheral blood	blood
6	chr1:158303000-158305000	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr1:158303000-158305200	Enhancers	Primary B cells from cord blood	blood
8	chr1:158303200-158304800	Enhancers	GM12878-XiMat	blood
9	chr1:158303400-158303600	Enhancers	Primary T cells from cord blood	blood
10	chr1:158303400-158304400	Active TSS	Fetal Thymus	thymus

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links