Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:165246572..165248438-chr1:165251078..165252915,2	K562	blood:
2	chr1:165243074..165245527-chr1:165251469..165253702,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12068638	0.82[ASN][1000 genomes]
rs12097516	0.82[ASN][1000 genomes]
rs12404307	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12752351	0.92[ASN][1000 genomes]
rs1807798	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1833030	0.85[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs2174696	0.83[CEU][hapmap]
rs4656442	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4657424	0.92[CHB][hapmap];0.82[ASN][1000 genomes]
rs4657425	0.82[ASN][1000 genomes]
rs4657426	0.81[ASN][1000 genomes]
rs4657427	0.92[CHB][hapmap];0.82[ASN][1000 genomes]
rs4657428	0.85[CHB][hapmap];0.82[ASN][1000 genomes]
rs4657429	0.82[ASN][1000 genomes]
rs4657431	0.92[ASN][1000 genomes]
rs58462518	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59327172	0.82[ASN][1000 genomes]
rs7528546	0.92[ASN][1000 genomes]
rs7530861	0.82[ASN][1000 genomes]
rs7534017	0.89[EUR][1000 genomes]
rs7540476	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869712	chr1:164866810-165299085	Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165244400-165252000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr1:165248800-165256600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:165251200-165252600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr1:165251600-165253200	Weak transcription	Liver	Liver
5	chr1:165251600-165256600	Weak transcription	HepG2	liver

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