Variant report

Variant	rs11809085
Chromosome Location	chr1:165265635-165265636
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11799765	0.85[EUR][1000 genomes]
rs11804125	0.96[EUR][1000 genomes]
rs11808645	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12138441	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16842354	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17405214	0.85[EUR][1000 genomes]
rs6666930	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6691412	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6692353	0.98[EUR][1000 genomes]
rs73013466	0.86[EUR][1000 genomes]
rs74118549	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7537922	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869712	chr1:164866810-165299085	Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165258800-165266600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr1:165265600-165266800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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