Variant report

Variant	rs17405214
Chromosome Location	chr1:165270168-165270169
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11799765	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11801202	0.81[AFR][1000 genomes]
rs11804125	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11808645	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs11809085	0.85[EUR][1000 genomes]
rs12138441	0.94[CEU][hapmap];0.85[EUR][1000 genomes]
rs1504694	0.81[AFR][1000 genomes]
rs16842354	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs6666930	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs6691412	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs6692353	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73013466	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs74118549	0.85[EUR][1000 genomes]
rs7537922	0.94[CEU][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869712	chr1:164866810-165299085	Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165267600-165276000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:165268200-165283400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr1:165269400-165276000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:165269600-165270200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr1:165269600-165270800	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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