Variant report

Variant	rs11814260
Chromosome Location	chr10:38000258-38000259
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11812731	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11814594	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11814775	0.91[AFR][1000 genomes]
rs11819611	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34485849	0.91[AFR][1000 genomes]
rs57719362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045684	chr10:37765361-38426204	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv540564	chr10:37765361-38426204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1040704	chr10:37940024-38451917	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	esv1794823	chr10:37961177-38002067	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv975072	chr10:37990724-38017623	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv975812	chr10:37990724-38084639	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:37999000-38002200	Enhancers	HSMMtube	muscle
2	chr10:37999400-38002200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:37999600-38002000	Enhancers	HSMM	muscle
4	chr10:37999800-38000400	Enhancers	Lung	lung
5	chr10:37999800-38002200	Enhancers	Left Ventricle	heart
6	chr10:37999800-38002200	Enhancers	Right Atrium	heart
7	chr10:37999800-38002600	Enhancers	Right Ventricle	heart
8	chr10:38000000-38000600	Enhancers	Rectal Smooth Muscle	rectum
9	chr10:38000000-38002200	Weak transcription	NHLF	lung
10	chr10:38000000-38002400	Enhancers	Stomach Smooth Muscle	stomach
11	chr10:38000000-38002600	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr10:38000200-38000400	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr10:38000200-38001000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr10:38000200-38001000	Enhancers	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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