Variant report

Variant	rs11814540
Chromosome Location	chr10:93885429-93885430
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93883461..93886266-chr10:94049200..94052149,2	MCF-7	breast:
2	chr10:93881358..93883169-chr10:93884864..93886864,2	K562	blood:

Variant related genes	Relation type
ENSG00000107864	Chromatin interaction
ENSG00000198060	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11186879	0.92[YRI][hapmap]
rs11816790	0.90[AFR][1000 genomes]
rs11816827	0.90[AFR][1000 genomes]
rs1571176	0.92[YRI][hapmap]
rs1935865	0.81[YRI][hapmap]
rs4933717	0.85[YRI][hapmap]
rs58689304	0.90[AFR][1000 genomes]
rs7088903	0.92[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051226	chr10:93711296-93915586	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv540745	chr10:93711296-93915586	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93859200-93901400	Weak transcription	Primary B cells from cord blood	blood
2	chr10:93868000-93901800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr10:93871000-93887200	Weak transcription	Primary B cells from peripheral blood	blood
4	chr10:93874600-93899600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr10:93881400-93886200	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr10:93881400-93886200	Enhancers	Brain Anterior Caudate	brain
7	chr10:93881400-93886200	Enhancers	Colon Smooth Muscle	Colon
8	chr10:93881400-93886200	Enhancers	Psoas Muscle	Psoas
9	chr10:93881400-93886200	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr10:93881400-93886200	Enhancers	Stomach Smooth Muscle	stomach
11	chr10:93881400-93886400	Enhancers	Fetal Heart	heart
12	chr10:93881400-93886400	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr10:93881600-93885800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
14	chr10:93881800-93886400	Enhancers	Stomach Mucosa	stomach
15	chr10:93882000-93885600	Enhancers	Brain Hippocampus Middle	brain
16	chr10:93882000-93886000	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr10:93882000-93886200	Enhancers	HUVEC	blood vessel
18	chr10:93882400-93886400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr10:93882400-93886400	Enhancers	HMEC	breast
20	chr10:93882600-93886200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr10:93882600-93886200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr10:93882600-93886200	Enhancers	NHEK	skin
23	chr10:93882600-93886200	Enhancers	Osteobl	bone
24	chr10:93882800-93886200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr10:93882800-93886200	Enhancers	Right Ventricle	heart
26	chr10:93883000-93886200	Enhancers	Sigmoid Colon	Sigmoid Colon
27	chr10:93883200-93885800	Enhancers	Fetal Stomach	stomach
28	chr10:93883200-93886200	Enhancers	Pancreas	Pancrea
29	chr10:93883400-93885600	Enhancers	Muscle Satellite Cultured Cells	--
30	chr10:93883400-93886200	Enhancers	Esophagus	oesophagus
31	chr10:93883600-93886200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr10:93884200-93886200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr10:93884400-93885600	Enhancers	Duodenum Smooth Muscle	Duodenum
34	chr10:93884400-93886200	Enhancers	Right Atrium	heart
35	chr10:93884400-93887400	Enhancers	Left Ventricle	heart
36	chr10:93884400-93890600	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr10:93884600-93886000	Enhancers	NH-A	brain
38	chr10:93884600-93886200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr10:93884600-93886200	Enhancers	HSMMtube	muscle
40	chr10:93884800-93885600	Enhancers	Gastric	stomach
41	chr10:93884800-93886600	Enhancers	HepG2	liver
42	chr10:93884800-93896400	Weak transcription	Fetal Intestine Small	intestine
43	chr10:93884800-93896800	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr10:93885000-93885800	Flanking Active TSS	Liver	Liver
45	chr10:93885000-93886400	Enhancers	Fetal Lung	lung
46	chr10:93885200-93891000	Weak transcription	Small Intestine	intestine
47	chr10:93885200-93896200	Weak transcription	Primary monocytes fromperipheralblood	blood
48	chr10:93885400-93886200	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr10:93885400-93886400	Enhancers	Hela-S3	cervix
50	chr10:93885400-93891200	Weak transcription	Monocytes-CD14+_RO01746	blood

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