Variant report

Variant	rs11816827
Chromosome Location	chr10:94046399-94046400
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94038337..94041233-chr10:94045379..94048057,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11814540	0.90[AFR][1000 genomes]
rs11816790	1.00[AFR][1000 genomes]
rs17107562	0.83[AFR][1000 genomes]
rs58689304	1.00[AFR][1000 genomes]
rs61066578	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94020200-94049800	Weak transcription	Brain Anterior Caudate	brain
2	chr10:94025800-94049800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr10:94039200-94048800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr10:94039200-94049600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr10:94039800-94049600	Weak transcription	Right Atrium	heart
6	chr10:94040000-94048600	Weak transcription	Lung	lung
7	chr10:94043200-94049800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr10:94044200-94049200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr10:94044200-94050000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr10:94044400-94049800	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr10:94044400-94049800	Weak transcription	Brain Substantia Nigra	brain
12	chr10:94044400-94049800	Weak transcription	Stomach Mucosa	stomach
13	chr10:94044400-94049800	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr10:94044600-94049800	Weak transcription	Fetal Intestine Small	intestine
15	chr10:94044800-94049800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr10:94045000-94049800	Weak transcription	Primary B cells from peripheral blood	blood
17	chr10:94045000-94049800	Weak transcription	Duodenum Mucosa	Duodenum
18	chr10:94045000-94049800	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr10:94045000-94049800	Weak transcription	Stomach Smooth Muscle	stomach
20	chr10:94045000-94049800	Weak transcription	GM12878-XiMat	blood
21	chr10:94046000-94050000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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