Variant report

Variant	rs61066578
Chromosome Location	chr10:94053408-94053409
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:94051163..94054027-chr10:94136887..94138401,2	K562	blood:
2	chr10:94051288..94054115-chr10:94056033..94058456,2	MCF-7	breast:
3	chr10:94051034..94053715-chr10:94061317..94064241,2	K562	blood:
4	chr10:94050937..94052594-chr10:94052946..94055735,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11816790	0.85[AFR][1000 genomes]
rs11816827	0.85[AFR][1000 genomes]
rs58689304	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94049800-94054200	Active TSS	GM12878-XiMat	blood
2	chr10:94051600-94057600	Weak transcription	Spleen	Spleen
3	chr10:94052000-94111800	Weak transcription	Gastric	stomach
4	chr10:94052200-94054600	Weak transcription	Pancreas	Pancrea
5	chr10:94052200-94059600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr10:94052200-94065800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr10:94052200-94071000	Weak transcription	Fetal Intestine Large	intestine
8	chr10:94052200-94109400	Weak transcription	Esophagus	oesophagus
9	chr10:94052400-94054200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr10:94052400-94054400	Weak transcription	Ovary	ovary
11	chr10:94052400-94054600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr10:94052400-94054800	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr10:94052400-94056400	Weak transcription	Right Atrium	heart
14	chr10:94052400-94057000	Weak transcription	Lung	lung
15	chr10:94052400-94058400	Weak transcription	Left Ventricle	heart
16	chr10:94052400-94059000	Weak transcription	Primary B cells from cord blood	blood
17	chr10:94052400-94060200	Weak transcription	Aorta	Aorta
18	chr10:94052400-94062800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr10:94052400-94063200	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr10:94052400-94063200	Weak transcription	Brain Anterior Caudate	brain
21	chr10:94052400-94070800	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr10:94052400-94080600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr10:94052400-94101200	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr10:94052400-94101600	Weak transcription	Rectal Smooth Muscle	rectum
25	chr10:94052400-94108800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr10:94052400-94114600	Weak transcription	Colonic Mucosa	Colon
27	chr10:94052600-94053600	Weak transcription	Duodenum Mucosa	Duodenum
28	chr10:94052600-94053600	Weak transcription	Fetal Heart	heart
29	chr10:94052600-94054800	Enhancers	HepG2	liver
30	chr10:94052600-94056200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr10:94052600-94058400	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr10:94052600-94060400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr10:94052600-94060800	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr10:94052600-94061800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr10:94052600-94062200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr10:94052600-94063200	Weak transcription	Brain Substantia Nigra	brain
37	chr10:94052600-94063600	Weak transcription	Brain Angular Gyrus	brain
38	chr10:94052600-94065200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr10:94052600-94068200	Weak transcription	Small Intestine	intestine
40	chr10:94052600-94070800	Weak transcription	NHDF-Ad	bronchial
41	chr10:94052600-94071600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr10:94052600-94077200	Weak transcription	Stomach Smooth Muscle	stomach
43	chr10:94052600-94102000	Weak transcription	NHLF	lung
44	chr10:94052600-94109400	Weak transcription	HSMMtube	muscle
45	chr10:94052800-94053600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr10:94052800-94053600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr10:94052800-94053600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr10:94052800-94053600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr10:94052800-94053600	Weak transcription	A549	lung
50	chr10:94052800-94053600	Weak transcription	NH-A	brain

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