Variant report

Variant	rs11817152
Chromosome Location	chr10:92781142-92781143
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11812832	1.00[AMR][1000 genomes]
rs11814799	1.00[AMR][1000 genomes]
rs11815875	1.00[AMR][1000 genomes]
rs11817329	1.00[AMR][1000 genomes]
rs12262568	1.00[AMR][1000 genomes]
rs56798039	1.00[AMR][1000 genomes]
rs73321551	1.00[AMR][1000 genomes]
rs73321555	1.00[AMR][1000 genomes]
rs73321561	1.00[AMR][1000 genomes]
rs73321582	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv430255	chr10:92769660-92872941	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv430258	chr10:92770145-92817973	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv430256	chr10:92770145-92872941	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv430260	chr10:92778715-92821721	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv430259	chr10:92778715-92848304	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92761800-92782800	Weak transcription	Aorta	Aorta
2	chr10:92767400-92781400	Weak transcription	HSMM	muscle
3	chr10:92775600-92783000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr10:92777200-92782000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr10:92777200-92782200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr10:92777600-92782400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr10:92778200-92781200	Weak transcription	Brain Substantia Nigra	brain
8	chr10:92778400-92781400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr10:92780200-92784800	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr10:92780200-92784800	Enhancers	Fetal Muscle Leg	muscle
11	chr10:92780400-92781600	Weak transcription	Ovary	ovary
12	chr10:92780600-92783000	Enhancers	Brain Cingulate Gyrus	brain
13	chr10:92781000-92782400	Enhancers	Brain Hippocampus Middle	brain
14	chr10:92781000-92782400	Enhancers	Dnd41	blood
15	chr10:92781000-92783000	Enhancers	Brain Anterior Caudate	brain
16	chr10:92781000-92784600	Enhancers	Fetal Heart	heart
17	chr10:92781000-92784800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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