Variant report

Variant	rs73321555
Chromosome Location	chr10:92759568-92759569
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF143	chr10:92759361-92759604	GM12878	blood:	n/a	n/a
2	PML	chr10:92759089-92760073	GM12878	blood:	n/a	n/a
3	BCLAF1	chr10:92759306-92760062	GM12878	blood:	n/a	n/a
4	SPI1	chr10:92759234-92759599	GM12891	blood:	n/a	n/a
5	NFIC	chr10:92757997-92760480	GM12878	blood:	n/a	n/a
6	POLR2A	chr10:92757981-92761033	GM12891	blood:	n/a	n/a
7	MAX	chr10:92758158-92759906	GM12878	blood:	n/a	chr10:92758634-92758643 chr10:92758633-92758643 chr10:92758634-92758644 chr10:92758634-92758644 chr10:92758637-92758653
8	RCOR1	chr10:92758393-92760175	GM12878	blood:	n/a	n/a
9	ZNF384	chr10:92758733-92759669	GM12878	blood:	n/a	n/a
10	SPI1	chr10:92759262-92759798	GM12878	blood:	n/a	n/a
11	RELA	chr10:92758288-92760599	GM10847	blood:	n/a	n/a
12	ATF2	chr10:92758984-92759932	GM12878	blood:	n/a	n/a
13	STAT5A	chr10:92758862-92759890	GM12878	blood:	n/a	n/a
14	MTA3	chr10:92758323-92759634	GM12878	blood:	n/a	n/a
15	NFATC1	chr10:92759149-92759759	GM12878	blood:	n/a	chr10:92759497-92759510
16	ATF2	chr10:92758343-92759908	GM12878	blood:	n/a	n/a
17	MAZ	chr10:92758449-92759734	GM12878	blood:	n/a	chr10:92758634-92758643 chr10:92758634-92758644 chr10:92758634-92758644 chr10:92758637-92758653
18	RELA	chr10:92758206-92760651	GM15510	blood:	n/a	n/a
19	STAT5A	chr10:92758346-92759726	GM12878	blood:	n/a	n/a
20	BCLAF1	chr10:92759197-92759802	GM12878	blood:	n/a	n/a
21	BCL3	chr10:92759157-92759633	GM12878	blood:	n/a	n/a
22	POLR2A	chr10:92757814-92759874	GM12878	blood:	n/a	n/a
23	POLR2A	chr10:92757304-92761112	GM12878	blood:	n/a	n/a
24	RELA	chr10:92758482-92760073	GM19099	blood:	n/a	n/a
25	MTA3	chr10:92757816-92760366	GM12878	blood:	n/a	n/a
26	WRNIP1	chr10:92759413-92761035	GM12878	blood:	n/a	n/a
27	NFIC	chr10:92758816-92759914	GM12878	blood:	n/a	n/a
28	CHD2	chr10:92758311-92759882	GM12878	blood:	n/a	n/a
29	NFATC1	chr10:92759156-92759892	GM12878	blood:	n/a	chr10:92759497-92759510
30	RELA	chr10:92758467-92760011	GM18951	blood:	n/a	n/a
31	RELA	chr10:92757948-92760399	GM12891	blood:	n/a	n/a
32	TBL1XR1	chr10:92758506-92759820	GM12878	blood:	n/a	n/a
33	RELA	chr10:92757981-92760246	GM18505	blood:	n/a	n/a
34	STAT1	chr10:92759488-92759593	GM12878	blood:	n/a	n/a
35	FOXM1	chr10:92759042-92759821	GM12878	blood:	n/a	n/a
36	FOXM1	chr10:92758399-92760298	GM12878	blood:	n/a	n/a
37	MXI1	chr10:92758273-92759651	GM12878	blood:	n/a	chr10:92758634-92758643
38	MEF2A	chr10:92758936-92759690	GM12878	blood:	n/a	chr10:92759375-92759390 chr10:92759375-92759392
39	BCL11A	chr10:92759175-92759624	GM12878	blood:	n/a	n/a
40	RELA	chr10:92758347-92760462	GM19193	blood:	n/a	n/a
41	BCL11A	chr10:92759295-92759591	GM12878	blood:	n/a	n/a
42	MEF2A	chr10:92758954-92759699	GM12878	blood:	n/a	chr10:92759375-92759390 chr10:92759375-92759392
43	EP300	chr10:92759206-92759778	GM12878	blood:	n/a	n/a
44	BATF	chr10:92759009-92759606	GM12878	blood:	n/a	n/a
45	BHLHE40	chr10:92758419-92760342	GM12878	blood:	n/a	n/a
46	IRF4	chr10:92759241-92759625	GM12878	blood:	n/a	n/a
47	USF2	chr10:92759458-92760383	GM12878	blood:	n/a	n/a
48	MEF2C	chr10:92758995-92759953	GM12878	blood:	n/a	chr10:92759375-92759390 chr10:92759375-92759392
49	RUNX3	chr10:92758261-92760085	GM12878	blood:	n/a	n/a
50	EP300	chr10:92758448-92759946	GM12878	blood:	n/a	chr10:92758862-92758871

Variant related genes	Relation type
ENSG00000273124	TF binding region

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11812832	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11814799	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11815875	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11817152	1.00[AMR][1000 genomes]
rs11817329	1.00[AMR][1000 genomes]
rs12262568	1.00[AMR][1000 genomes]
rs56798039	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73321551	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73321561	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73321582	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92744200-92766200	Weak transcription	Right Ventricle	heart
2	chr10:92751600-92760200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:92754400-92765400	Weak transcription	Thymus	Thymus
4	chr10:92756400-92761600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr10:92756400-92766400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr10:92756600-92759600	Weak transcription	Dnd41	blood
7	chr10:92757400-92760200	Enhancers	HSMMtube	muscle
8	chr10:92758200-92761000	Enhancers	Primary B cells from peripheral blood	blood
9	chr10:92758400-92760400	Enhancers	Primary B cells from cord blood	blood
10	chr10:92759200-92759800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr10:92759200-92760200	Weak transcription	Right Atrium	heart
12	chr10:92759400-92760000	Flanking Active TSS	GM12878-XiMat	blood

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