Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10508988	1.00[EUR][1000 genomes]
rs12253195	1.00[EUR][1000 genomes]
rs1917200	1.00[EUR][1000 genomes]
rs1917202	1.00[EUR][1000 genomes]
rs6480984	1.00[EUR][1000 genomes]
rs6480985	1.00[EUR][1000 genomes]
rs6480994	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6480995	1.00[EUR][1000 genomes]
rs7068832	1.00[EUR][1000 genomes]
rs7071196	1.00[EUR][1000 genomes]
rs7075275	1.00[EUR][1000 genomes]
rs7076961	1.00[EUR][1000 genomes]
rs7077265	1.00[EUR][1000 genomes]
rs7078272	1.00[EUR][1000 genomes]
rs7080872	1.00[EUR][1000 genomes]
rs7091041	1.00[EUR][1000 genomes]
rs7091793	1.00[EUR][1000 genomes]
rs7093139	1.00[EUR][1000 genomes]
rs7898984	1.00[EUR][1000 genomes]
rs7900554	1.00[EUR][1000 genomes]
rs7907435	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467201	chr10:54697623-54929003	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv550906	chr10:54697623-54929003	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv470939	chr10:54700783-54917339	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv2761596	chr10:54814054-54886345	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv825385	chr10:54878972-54950501	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:54877200-54881000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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