Variant report

Variant	rs7907435
Chromosome Location	chr10:54882244-54882245
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10508988	1.00[EUR][1000 genomes]
rs11818241	1.00[EUR][1000 genomes]
rs12253195	1.00[EUR][1000 genomes]
rs1917200	1.00[EUR][1000 genomes]
rs1917202	1.00[EUR][1000 genomes]
rs6480984	1.00[EUR][1000 genomes]
rs6480985	1.00[EUR][1000 genomes]
rs6480994	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6480995	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7068832	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7071196	1.00[EUR][1000 genomes]
rs7075275	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7076961	1.00[EUR][1000 genomes]
rs7077265	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7078272	1.00[EUR][1000 genomes]
rs7080872	1.00[EUR][1000 genomes]
rs7091041	1.00[EUR][1000 genomes]
rs7091793	1.00[EUR][1000 genomes]
rs7093139	1.00[EUR][1000 genomes]
rs7898984	1.00[EUR][1000 genomes]
rs7900554	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467201	chr10:54697623-54929003	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv550906	chr10:54697623-54929003	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv470939	chr10:54700783-54917339	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv2761596	chr10:54814054-54886345	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv825385	chr10:54878972-54950501	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv1797317	chr10:54879944-54884225	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
7	esv1825775	chr10:54879944-54884225	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
8	esv1825481	chr10:54879944-54884328	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
9	esv1823954	chr10:54879944-54884522	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:54881200-54884000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:54881400-54883000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr10:54881800-54882600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links