Variant report

Variant	rs11818332
Chromosome Location	chr10:94353438-94353439
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:94351268..94354735-chr10:94355145..94359396,3	K562	blood:
2	chr10:94330286..94336827-chr10:94349891..94354260,15	K562	blood:
3	chr10:94327650..94337583-chr10:94349444..94356782,22	K562	blood:
4	chr10:94349285..94352035-chr10:94353107..94354647,2	K562	blood:
5	chr10:94351156..94354361-chr10:94606648..94609927,3	MCF-7	breast:
6	chr10:94349533..94356622-chr10:94447410..94453498,11	K562	blood:
7	chr10:94352936..94353453-chr19:36630960..36631661,2	Hela-S3	cervix:
8	chr10:94352936..94353466-chr17:74733021..74733712,2	Hela-S3	cervix:
9	chr10:94349533..94354628-chr10:94448059..94453493,12	K562	blood:
10	chr10:94332262..94336114-chr10:94349834..94354042,11	MCF-7	breast:
11	chr10:94353254..94355165-chr10:94355229..94358982,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000092931	Chromatin interaction
ENSG00000119912	Chromatin interaction
ENSG00000138190	Chromatin interaction
ENSG00000152804	Chromatin interaction
ENSG00000126247	Chromatin interaction
ENSG00000184111	Chromatin interaction
ENSG00000161547	Chromatin interaction

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs11187083	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187084	1.00[YRI][hapmap];0.99[AFR][1000 genomes]
rs11187087	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187100	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187102	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187104	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187120	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11597699	0.93[ASN][1000 genomes]
rs11598250	0.91[ASN][1000 genomes]
rs11812310	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11812813	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11813238	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11816962	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11817621	0.98[AFR][1000 genomes]
rs11817798	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11818705	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11818708	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11818750	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11819301	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11819351	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12242681	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12244573	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12244924	1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12250905	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12257279	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12259474	0.99[AFR][1000 genomes]
rs12260688	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12261518	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs12261697	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12262781	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12264372	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12264712	0.93[YRI][hapmap];0.85[AFR][1000 genomes]
rs17107758	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17107764	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17875340	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2488058	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2497319	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2497320	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28615450	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28692618	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3781236	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4604791	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58071219	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58988864	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61011943	0.88[AFR][1000 genomes]
rs6583828	0.83[AFR][1000 genomes]
rs6583829	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6583832	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6583834	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6583837	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7069680	0.97[YRI][hapmap];0.98[AFR][1000 genomes]
rs7070990	0.93[CHB][hapmap];0.88[JPT][hapmap]
rs7076842	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7077137	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7079583	0.93[CHB][hapmap];0.88[JPT][hapmap]
rs7079602	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs7084441	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7085790	1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7087860	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7088685	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7095585	0.83[AFR][1000 genomes]
rs7096520	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73311731	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73325701	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7893798	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7898478	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7898506	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7902436	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7914248	0.98[AFR][1000 genomes]
rs7915915	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7917359	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7922902	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9731595	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	esv1792868	chr10:94232247-94409749	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv895894	chr10:94249982-94452430	Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv895895	chr10:94304132-94372706	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94350600-94353600	Active TSS	Right Atrium	heart
2	chr10:94350600-94354400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr10:94350600-94354800	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr10:94350600-94355000	Active TSS	HUES64 Cell Line	embryonic stem cell
5	chr10:94350600-94355200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr10:94350600-94355400	Active TSS	GM12878-XiMat	blood
7	chr10:94350600-94355600	Active TSS	HUES6 Cell Line	embryonic stem cell
8	chr10:94350600-94355800	Active TSS	iPS-15b Cell Line	embryonic stem cell
9	chr10:94350800-94353800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr10:94350800-94354000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
11	chr10:94350800-94354800	Active TSS	Fetal Brain Female	brain
12	chr10:94350800-94355000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:94350800-94355600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr10:94350800-94355800	Active TSS	Thymus	Thymus
15	chr10:94351000-94353600	Active TSS	Brain Anterior Caudate	brain
16	chr10:94351000-94354200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr10:94351000-94354200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
18	chr10:94351000-94354800	Active TSS	H1 Cell Line	embryonic stem cell
19	chr10:94351000-94354800	Active TSS	HSMM	muscle
20	chr10:94351000-94355000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr10:94351000-94355200	Active TSS	H9 Cell Line	embryonic stem cell
22	chr10:94351000-94355600	Active TSS	iPS-20b Cell Line	embryonic stem cell
23	chr10:94351000-94356600	Active TSS	K562	blood
24	chr10:94351200-94353800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr10:94351200-94353800	Active TSS	HSMMtube	muscle
26	chr10:94351200-94354200	Active TSS	HUES48 Cell Line	embryonic stem cell
27	chr10:94351200-94354200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr10:94351200-94354200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr10:94351200-94354400	Active TSS	NHDF-Ad	bronchial
30	chr10:94351200-94354600	Active TSS	Duodenum Mucosa	Duodenum
31	chr10:94351200-94354600	Active TSS	Fetal Stomach	stomach
32	chr10:94351200-94354800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr10:94351200-94354800	Active TSS	Fetal Kidney	kidney
34	chr10:94351200-94354800	Active TSS	A549	lung
35	chr10:94351200-94355000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr10:94351200-94355000	Active TSS	Fetal Intestine Large	intestine
37	chr10:94351200-94355600	Active TSS	iPS-18 Cell Line	embryonic stem cell
38	chr10:94351400-94353800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr10:94351400-94354000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr10:94351400-94354400	Active TSS	NHEK	skin
41	chr10:94351400-94354800	Active TSS	Fetal Intestine Small	intestine
42	chr10:94351400-94355000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr10:94351600-94353800	Flanking Active TSS	Primary B cells from cord blood	blood
44	chr10:94352000-94353800	Active TSS	NH-A	brain
45	chr10:94352000-94354600	Active TSS	HMEC	breast
46	chr10:94352000-94354800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr10:94352000-94355200	Active TSS	Brain Germinal Matrix	brain
48	chr10:94352200-94353800	Active TSS	Fetal Heart	heart
49	chr10:94352200-94354000	Active TSS	Osteobl	bone
50	chr10:94352200-94354600	Active TSS	Fetal Thymus	thymus

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