Variant report

Variant	rs7077137
Chromosome Location	chr10:94390611-94390612
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94389206..94391321-chr10:94393095..94394615,2	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs11187083	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11187087	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11187100	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11187102	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11187104	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11187120	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11812310	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11812813	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11813238	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11816962	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11817798	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11818332	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11818708	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11818750	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11819301	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11819351	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12242681	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12244573	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12244924	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12250905	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12257279	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12260688	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12261697	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12262781	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12264372	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17107758	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17107764	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17875340	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2488058	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2497319	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2497320	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28615450	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28692618	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3781236	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4604791	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs58071219	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs58988864	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6583829	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6583832	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6583834	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6583837	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7076842	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7084441	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7085790	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7087860	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7088685	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7096520	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73311731	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73325701	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7893798	0.87[EUR][1000 genomes]
rs7898478	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7898506	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7902436	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7915915	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7917359	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7922902	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9731595	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	esv1792868	chr10:94232247-94409749	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv895894	chr10:94249982-94452430	Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	esv3446249	chr10:94374508-94549394	Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94353600-94403800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:94354000-94420000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr10:94354200-94416000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr10:94362000-94399800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr10:94363600-94410200	Weak transcription	Fetal Kidney	kidney
6	chr10:94364000-94416400	Strong transcription	Dnd41	blood
7	chr10:94364200-94417400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr10:94364400-94403800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr10:94364400-94415200	Weak transcription	Fetal Heart	heart
10	chr10:94365000-94395200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr10:94365600-94415600	Strong transcription	Fetal Thymus	thymus
12	chr10:94366000-94409600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr10:94367200-94411400	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr10:94367400-94394000	Weak transcription	Fetal Intestine Large	intestine
15	chr10:94367400-94399600	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr10:94371000-94408600	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr10:94371000-94414600	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr10:94371000-94417000	Weak transcription	Primary B cells from cord blood	blood
19	chr10:94371800-94408800	Weak transcription	Fetal Brain Female	brain
20	chr10:94373600-94399800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr10:94374800-94393000	Weak transcription	NHEK	skin
22	chr10:94374800-94410400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr10:94374800-94416000	Weak transcription	Placenta	Placenta
24	chr10:94374800-94418600	Weak transcription	Brain Germinal Matrix	brain
25	chr10:94375000-94391800	Weak transcription	NH-A	brain
26	chr10:94376200-94403600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr10:94379400-94401400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr10:94381400-94395000	Weak transcription	NHDF-Ad	bronchial
29	chr10:94382000-94396000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr10:94382000-94399000	Weak transcription	Fetal Intestine Small	intestine
31	chr10:94382800-94391000	Weak transcription	Ovary	ovary
32	chr10:94383000-94394400	Weak transcription	K562	blood
33	chr10:94383000-94414600	Weak transcription	Duodenum Mucosa	Duodenum
34	chr10:94384000-94414200	Weak transcription	Primary T cells from cord blood	blood
35	chr10:94384000-94416400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr10:94384400-94391800	Weak transcription	HepG2	liver
37	chr10:94384400-94403800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr10:94384800-94394000	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr10:94385800-94392000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr10:94386400-94393200	Weak transcription	HSMM	muscle
41	chr10:94387400-94396200	Strong transcription	Cortex derived primary cultured neurospheres	brain
42	chr10:94388200-94395000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr10:94388400-94391600	Weak transcription	Fetal Lung	lung
44	chr10:94388800-94392200	Strong transcription	Fetal Stomach	stomach
45	chr10:94389000-94416400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr10:94389400-94392600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr10:94389800-94391400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr10:94389800-94404800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr10:94390000-94392000	Weak transcription	GM12878-XiMat	blood
50	chr10:94390000-94394000	Weak transcription	Fetal Muscle Trunk	muscle

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