Variant report

Variant	rs11818995
Chromosome Location	chr10:93302034-93302035
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF7L2	chr10:93300324-93302257	Hela-S3	cervix:	n/a	chr10:93301734-93301741 chr10:93301494-93301508
2	POLR2A	chr10:93301980-93302214	Hela-S3	cervix:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93300705..93303047-chr10:93391078..93393805,2	MCF-7	breast:
2	chr10:93297416..93300148-chr10:93300750..93302259,2	MCF-7	breast:

Variant related genes	Relation type
RPS27P1	TF binding region
ENSG00000119938	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11186612	1.00[EUR][1000 genomes]
rs11813863	0.86[AMR][1000 genomes]
rs11814537	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11814595	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11816549	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93296200-93312200	Weak transcription	Psoas Muscle	Psoas
2	chr10:93297000-93311400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr10:93297000-93311400	Weak transcription	Left Ventricle	heart
4	chr10:93299400-93311400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr10:93300000-93302800	Enhancers	Hela-S3	cervix
6	chr10:93300000-93304200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr10:93300000-93306600	Enhancers	Fetal Lung	lung
8	chr10:93300200-93302200	Enhancers	GM12878-XiMat	blood
9	chr10:93300400-93302200	Enhancers	Fetal Stomach	stomach
10	chr10:93300800-93302600	Enhancers	Fetal Brain Male	brain
11	chr10:93300800-93302600	Enhancers	NHLF	lung
12	chr10:93300800-93302800	Enhancers	Fetal Muscle Trunk	muscle
13	chr10:93301000-93302600	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr10:93301000-93302800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr10:93301000-93314800	Weak transcription	Aorta	Aorta
16	chr10:93301200-93302600	Enhancers	Fetal Muscle Leg	muscle
17	chr10:93301400-93302600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr10:93301600-93302800	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr10:93301800-93302200	Enhancers	Placenta	Placenta
20	chr10:93301800-93302600	Enhancers	Ovary	ovary
21	chr10:93301800-93302800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr10:93302000-93302400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr10:93302000-93302400	Enhancers	Fetal Kidney	kidney
24	chr10:93302000-93302600	Enhancers	Right Ventricle	heart
25	chr10:93302000-93302600	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr10:93302000-93302800	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr10:93302000-93302800	Enhancers	Lung	lung

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