Variant report

Variant	rs11813863
Chromosome Location	chr10:93311710-93311711
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:92639868..92640796-chr10:93311331..93312227,2	MCF-7	breast:
2	chr10:93311257..93312872-chr10:93394985..93396104,5	MCF-7	breast:
3	chr10:93309981..93319603-chr10:93387875..93394075,18	MCF-7	breast:
4	chr10:93057890..93058410-chr10:93311655..93312281,2	K562	blood:
5	chr10:93258411..93259432-chr10:93311351..93312312,3	MCF-7	breast:
6	chr10:93309163..93311774-chr10:93314390..93315926,2	MCF-7	breast:
7	chr10:93311259..93312202-chr10:93394865..93395816,4	K562	blood:
8	chr10:93311514..93312203-chr10:93392449..93393186,2	MCF-7	breast:
9	chr10:93310787..93313296-chr10:93313678..93315496,2	K562	blood:
10	chr10:93311332..93312699-chr10:93453654..93454623,6	MCF-7	breast:
11	chr10:93253136..93254014-chr10:93311415..93312189,3	MCF-7	breast:
12	chr10:93311362..93313128-chr10:93394763..93396863,21	MCF-7	breast:
13	chr10:93311487..93312272-chr10:93504776..93505607,2	MCF-7	breast:
14	chr10:93057747..93058550-chr10:93311188..93311789,2	MCF-7	breast:
15	chr10:93253026..93253657-chr10:93311244..93311773,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000119938	Chromatin interaction
ENSG00000222305	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11814537	0.86[AMR][1000 genomes]
rs11818995	0.86[AMR][1000 genomes]
rs11819502	0.85[AMR][1000 genomes]
rs12242942	1.00[MEX][hapmap]
rs12358444	1.00[CEU][hapmap]
rs17106758	1.00[MEX][hapmap]
rs17106777	1.00[MEX][hapmap]
rs1854539	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv19622	chr10:93305214-93361590	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93296200-93312200	Weak transcription	Psoas Muscle	Psoas
2	chr10:93301000-93314800	Weak transcription	Aorta	Aorta
3	chr10:93302600-93312000	Weak transcription	NHLF	lung
4	chr10:93306400-93312200	Weak transcription	Pancreas	Pancrea
5	chr10:93308600-93312200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr10:93309800-93311800	Enhancers	Liver	Liver
7	chr10:93311400-93311800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr10:93311400-93311800	Enhancers	Brain Cingulate Gyrus	brain
9	chr10:93311400-93311800	Enhancers	Brain Substantia Nigra	brain
10	chr10:93311400-93311800	Enhancers	Fetal Heart	heart
11	chr10:93311400-93311800	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr10:93311400-93311800	Enhancers	Stomach Smooth Muscle	stomach
13	chr10:93311400-93312200	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr10:93311400-93312200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr10:93311400-93312200	Enhancers	Left Ventricle	heart
16	chr10:93311400-93312400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr10:93311400-93312600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr10:93311400-93312800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr10:93311400-93312800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr10:93311400-93312800	Enhancers	Ovary	ovary
21	chr10:93311400-93313000	Enhancers	Hela-S3	cervix
22	chr10:93311400-93313400	Enhancers	Fetal Stomach	stomach
23	chr10:93311400-93313600	Enhancers	Stomach Mucosa	stomach
24	chr10:93311400-93314400	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr10:93311600-93311800	Flanking Active TSS	Brain Anterior Caudate	brain
26	chr10:93311600-93311800	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr10:93311600-93311800	Enhancers	Osteobl	bone
28	chr10:93311600-93312000	Enhancers	K562	blood
29	chr10:93311600-93312200	Enhancers	A549	lung
30	chr10:93311600-93312400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr10:93311600-93312600	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr10:93311600-93312800	Flanking Active TSS	Fetal Lung	lung
33	chr10:93311600-93312800	Enhancers	Fetal Muscle Trunk	muscle
34	chr10:93311600-93313000	Enhancers	Fetal Muscle Leg	muscle
35	chr10:93311600-93316400	Enhancers	HepG2	liver
36	chr10:93311600-93321000	Enhancers	Fetal Intestine Small	intestine

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