Variant report

Variant	rs17106777
Chromosome Location	chr10:93335269-93335270
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93333836..93336172-chr10:93567023..93568938,2	MCF-7	breast:
2	chr10:93332183..93336360-chr10:93344097..93346879,3	K562	blood:

Variant related genes	Relation type
ENSG00000180581	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11813863	1.00[MEX][hapmap]
rs12242942	1.00[MEX][hapmap]
rs17106758	0.84[ASW][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap]
rs17106774	0.95[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1854539	1.00[ASW][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv19622	chr10:93305214-93361590	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93315200-93335600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr10:93323200-93338000	Weak transcription	HSMMtube	muscle
3	chr10:93324400-93341800	Weak transcription	Aorta	Aorta
4	chr10:93327800-93335600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr10:93327800-93347400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr10:93328400-93335400	Weak transcription	HMEC	breast
7	chr10:93331800-93335600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr10:93333400-93336200	Enhancers	Fetal Lung	lung
9	chr10:93333400-93339800	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr10:93333800-93336000	Enhancers	Placenta Amnion	Placenta Amnion
11	chr10:93334000-93335800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr10:93334200-93335600	Enhancers	Right Atrium	heart
13	chr10:93334200-93335800	Enhancers	Left Ventricle	heart
14	chr10:93334200-93336000	Enhancers	Stomach Smooth Muscle	stomach
15	chr10:93334400-93335400	Enhancers	Colon Smooth Muscle	Colon
16	chr10:93334400-93335800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr10:93334400-93336000	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr10:93334400-93336000	Enhancers	Rectal Smooth Muscle	rectum
19	chr10:93334600-93335600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr10:93334600-93335800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr10:93334600-93336000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr10:93334600-93336000	Enhancers	Psoas Muscle	Psoas
23	chr10:93334600-93336200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr10:93334600-93336400	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr10:93334800-93335800	Enhancers	Right Ventricle	heart
26	chr10:93334800-93336200	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr10:93335000-93335600	Enhancers	K562	blood
28	chr10:93335000-93336600	Enhancers	Hela-S3	cervix
29	chr10:93335000-93338600	Weak transcription	Fetal Stomach	stomach
30	chr10:93335000-93347600	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr10:93335200-93335400	Flanking Active TSS	Brain Substantia Nigra	brain
32	chr10:93335200-93335400	Flanking Active TSS	Fetal Heart	heart
33	chr10:93335200-93335600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr10:93335200-93336200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr10:93335200-93337800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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