Variant report

Variant	rs12242942
Chromosome Location	chr10:93317398-93317399
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93317213..93320903-chr10:93391428..93394572,3	MCF-7	breast:
2	chr10:93315882..93318453-chr10:93320289..93322933,2	MCF-7	breast:
3	chr10:93309981..93319603-chr10:93387875..93394075,18	MCF-7	breast:
4	chr10:93316526..93318307-chr10:93400895..93403108,2	MCF-7	breast:
5	chr10:93317021..93319231-chr10:93366500..93369129,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119938	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11813863	1.00[MEX][hapmap]
rs17106758	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs17106777	1.00[MEX][hapmap]
rs1854539	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs57026336	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv19622	chr10:93305214-93361590	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93311600-93321000	Enhancers	Fetal Intestine Small	intestine
2	chr10:93312000-93320800	Enhancers	Fetal Intestine Large	intestine
3	chr10:93312000-93321000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:93312200-93318600	Enhancers	Fetal Heart	heart
5	chr10:93312600-93320000	Enhancers	Liver	Liver
6	chr10:93314800-93318200	Enhancers	Fetal Lung	lung
7	chr10:93314800-93321600	Enhancers	Stomach Mucosa	stomach
8	chr10:93315200-93317400	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr10:93315200-93317800	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr10:93315200-93321000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr10:93315200-93321200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr10:93315200-93321200	Weak transcription	Fetal Muscle Trunk	muscle
13	chr10:93315200-93322600	Weak transcription	Aorta	Aorta
14	chr10:93315200-93325600	Weak transcription	Gastric	stomach
15	chr10:93315200-93335600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr10:93315400-93323000	Weak transcription	Pancreas	Pancrea
17	chr10:93316000-93318400	Enhancers	Rectal Mucosa Donor 29	rectum
18	chr10:93316000-93320600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr10:93316200-93318000	Enhancers	Fetal Stomach	stomach
20	chr10:93316400-93317400	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr10:93316400-93318000	Enhancers	Stomach Smooth Muscle	stomach
22	chr10:93316400-93319000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr10:93316400-93321000	Weak transcription	Esophagus	oesophagus
24	chr10:93316600-93317400	Enhancers	Osteobl	bone
25	chr10:93316600-93318000	Enhancers	NHDF-Ad	bronchial
26	chr10:93316600-93318400	Enhancers	Duodenum Mucosa	Duodenum
27	chr10:93316600-93320800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr10:93316600-93323200	Weak transcription	Colon Smooth Muscle	Colon
29	chr10:93316800-93317600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr10:93316800-93317600	Active TSS	Pancreatic Islets	Pancreatic Islet
31	chr10:93316800-93317600	Flanking Active TSS	HepG2	liver
32	chr10:93316800-93318000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr10:93316800-93318000	Enhancers	GM12878-XiMat	blood
34	chr10:93316800-93318200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr10:93317000-93317400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr10:93317000-93318200	Enhancers	Adipose Nuclei	Adipose
37	chr10:93317000-93318800	Weak transcription	Psoas Muscle	Psoas
38	chr10:93317200-93317600	Weak transcription	HSMMtube	muscle
39	chr10:93317200-93322600	Weak transcription	Right Atrium	heart
40	chr10:93317200-93323000	Weak transcription	Left Ventricle	heart
41	chr10:93317200-93324000	Weak transcription	Fetal Muscle Leg	muscle

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