Variant report

Variant	rs11819114
Chromosome Location	chr10:90650843-90650844
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12412106	0.86[CEU][hapmap]
rs17113560	0.86[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529324	chr10:90198865-90738588	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
4	nsv831942	chr10:90564697-90730352	Flanking Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90641000-90653600	Weak transcription	Gastric	stomach
2	chr10:90641400-90658600	Weak transcription	Brain Angular Gyrus	brain
3	chr10:90641600-90653200	Weak transcription	Colonic Mucosa	Colon
4	chr10:90641800-90653800	Weak transcription	Stomach Mucosa	stomach
5	chr10:90641800-90656400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr10:90641800-90661800	Weak transcription	Thymus	Thymus
7	chr10:90642000-90651000	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr10:90642000-90684800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr10:90642000-90686400	Weak transcription	Brain Cingulate Gyrus	brain
10	chr10:90642200-90656600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr10:90642400-90651200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr10:90642400-90652000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr10:90642600-90653800	Weak transcription	Primary hematopoietic stem cells	blood
14	chr10:90642800-90656400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr10:90643200-90651800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr10:90643400-90651800	Weak transcription	NH-A	brain
17	chr10:90644200-90652000	Weak transcription	HMEC	breast
18	chr10:90644200-90653400	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr10:90644400-90652200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr10:90644600-90652000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr10:90646800-90651800	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr10:90646800-90651800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr10:90646800-90651800	Weak transcription	HSMMtube	muscle
24	chr10:90646800-90651800	Weak transcription	NHEK	skin
25	chr10:90646800-90653600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr10:90646800-90656200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr10:90646800-90656800	Weak transcription	Psoas Muscle	Psoas
28	chr10:90647000-90652000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr10:90647200-90651800	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr10:90647400-90651800	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr10:90647400-90652000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr10:90647400-90656000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr10:90647400-90675200	Weak transcription	Spleen	Spleen
34	chr10:90647400-90681000	Weak transcription	Aorta	Aorta
35	chr10:90647800-90653600	Enhancers	Osteobl	bone
36	chr10:90648000-90652200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr10:90648000-90654200	Enhancers	Muscle Satellite Cultured Cells	--
38	chr10:90648000-90656000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr10:90648200-90652200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr10:90648200-90654000	Weak transcription	Fetal Thymus	thymus
41	chr10:90648200-90654800	Weak transcription	Left Ventricle	heart
42	chr10:90648400-90651800	Weak transcription	Small Intestine	intestine
43	chr10:90648400-90652000	Weak transcription	Primary T cells fromperipheralblood	blood
44	chr10:90648400-90652000	Weak transcription	Ovary	ovary
45	chr10:90648400-90652200	Weak transcription	Dnd41	blood
46	chr10:90648400-90653200	Weak transcription	Fetal Muscle Leg	muscle
47	chr10:90648400-90653400	Weak transcription	Fetal Intestine Large	intestine
48	chr10:90648400-90653600	Weak transcription	Duodenum Mucosa	Duodenum
49	chr10:90648400-90656200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr10:90648600-90651000	Flanking Active TSS	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links