Variant report

Variant	rs17113560
Chromosome Location	chr10:90600756-90600757
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11202875	0.93[GIH][hapmap]
rs11819114	0.86[CEU][hapmap]
rs1214551	0.82[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1214565	0.82[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17096285	0.86[GIH][hapmap]
rs17114186	0.86[GIH][hapmap]
rs7077956	0.86[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529324	chr10:90198865-90738588	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
4	nsv467415	chr10:90478483-90600865	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
5	nsv551840	chr10:90478483-90600865	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
6	nsv831942	chr10:90564697-90730352	Flanking Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90578000-90607200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr10:90578600-90611200	Weak transcription	Esophagus	oesophagus
3	chr10:90589000-90608800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:90593800-90600800	Weak transcription	Fetal Thymus	thymus
5	chr10:90595600-90600800	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr10:90597000-90601000	Weak transcription	GM12878-XiMat	blood
7	chr10:90597600-90601800	Enhancers	Stomach Mucosa	stomach
8	chr10:90598200-90601000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr10:90598800-90601800	Enhancers	Fetal Intestine Large	intestine
10	chr10:90598800-90608000	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr10:90599000-90601600	Enhancers	Fetal Intestine Small	intestine
12	chr10:90599600-90601200	Enhancers	Duodenum Mucosa	Duodenum
13	chr10:90599600-90605000	Weak transcription	Gastric	stomach
14	chr10:90599800-90601400	Enhancers	NHEK	skin
15	chr10:90600200-90601600	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr10:90600400-90600800	Flanking Active TSS	Liver	Liver
17	chr10:90600600-90601000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr10:90600600-90601400	Enhancers	Pancreas	Pancrea
19	chr10:90600600-90601400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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