Variant report

Variant	rs1181985
Chromosome Location	chr5:128329797-128329798
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:128327480..128330043-chr5:128331168..128333231,2	K562	blood:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10073185	0.80[ASN][1000 genomes]
rs11241987	0.85[EUR][1000 genomes]
rs11740215	0.83[EUR][1000 genomes]
rs11743171	0.83[EUR][1000 genomes]
rs1181983	0.82[CHB][hapmap];0.87[JPT][hapmap];0.90[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17616974	0.84[EUR][1000 genomes]
rs17616991	0.84[EUR][1000 genomes]
rs17678874	0.84[EUR][1000 genomes]
rs17766880	0.80[CHB][hapmap]
rs2526248	0.84[EUR][1000 genomes]
rs2526249	0.84[EUR][1000 genomes]
rs2526251	0.83[EUR][1000 genomes]
rs2526253	0.84[EUR][1000 genomes]
rs2526257	0.84[EUR][1000 genomes]
rs2577415	0.87[JPT][hapmap]
rs2577423	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2577426	0.84[EUR][1000 genomes]
rs2577428	0.84[EUR][1000 genomes]
rs2577429	0.84[EUR][1000 genomes]
rs2577430	0.84[EUR][1000 genomes]
rs2577432	0.84[EUR][1000 genomes]
rs2577433	0.84[EUR][1000 genomes]
rs2577434	0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs2577435	0.84[EUR][1000 genomes]
rs2577436	0.84[EUR][1000 genomes]
rs2577437	0.84[EUR][1000 genomes]
rs2577438	0.84[EUR][1000 genomes]
rs2577439	0.84[EUR][1000 genomes]
rs2577440	0.82[EUR][1000 genomes]
rs2577442	0.82[EUR][1000 genomes]
rs2577443	0.83[EUR][1000 genomes]
rs2577542	0.84[EUR][1000 genomes]
rs2577543	0.84[EUR][1000 genomes]
rs2577544	0.84[EUR][1000 genomes]
rs2577545	0.84[EUR][1000 genomes]
rs2577546	0.84[EUR][1000 genomes]
rs2577547	0.84[EUR][1000 genomes]
rs3094874	0.82[EUR][1000 genomes]
rs3098300	0.84[EUR][1000 genomes]
rs35386300	0.84[EUR][1000 genomes]
rs35779465	0.82[EUR][1000 genomes]
rs35869181	0.82[EUR][1000 genomes]
rs36155285	0.80[EUR][1000 genomes]
rs36188905	0.82[EUR][1000 genomes]
rs36191603	0.82[EUR][1000 genomes]
rs36192465	0.84[EUR][1000 genomes]
rs62399671	0.84[EUR][1000 genomes]
rs62399676	0.82[EUR][1000 genomes]
rs62399681	0.84[EUR][1000 genomes]
rs62399682	0.84[EUR][1000 genomes]
rs62399683	0.81[EUR][1000 genomes]
rs62399685	0.84[EUR][1000 genomes]
rs67198161	0.84[EUR][1000 genomes]
rs6861986	0.84[EUR][1000 genomes]
rs6881009	0.84[EUR][1000 genomes]
rs6881032	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882839	chr5:128205828-128390167	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv882840	chr5:128205828-128428962	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830485	chr5:128298622-128480492	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
4	nsv882841	chr5:128301971-128400356	Flanking Bivalent TSS/Enh Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv882842	chr5:128301971-128552706	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
6	nsv882843	chr5:128325025-128367988	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv882844	chr5:128325025-128377555	Enhancers Genic enhancers Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv882845	chr5:128325025-128404226	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv599701	chr5:128328165-128773052	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:128309600-128338200	Weak transcription	Left Ventricle	heart
2	chr5:128321000-128335000	Weak transcription	Fetal Heart	heart
3	chr5:128326600-128335000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr5:128328600-128330000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr5:128329000-128372000	Weak transcription	Placenta Amnion	Placenta Amnion

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