Variant report

Variant	rs2577423
Chromosome Location	chr5:128313080-128313081
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:128309200..128312027-chr5:128312366..128314966,3	K562	blood:

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10073185	0.84[ASN][1000 genomes]
rs11241987	0.87[EUR][1000 genomes]
rs11740215	0.85[EUR][1000 genomes]
rs11743171	0.85[EUR][1000 genomes]
rs1181983	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1181985	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17616784	0.80[EUR][1000 genomes]
rs17616974	0.86[EUR][1000 genomes]
rs17616991	0.86[EUR][1000 genomes]
rs17678874	0.86[EUR][1000 genomes]
rs2526241	0.80[EUR][1000 genomes]
rs2526243	0.80[EUR][1000 genomes]
rs2526248	0.86[EUR][1000 genomes]
rs2526249	0.86[EUR][1000 genomes]
rs2526251	0.85[EUR][1000 genomes]
rs2526253	0.86[EUR][1000 genomes]
rs2526257	0.86[EUR][1000 genomes]
rs2577426	0.86[EUR][1000 genomes]
rs2577428	0.86[EUR][1000 genomes]
rs2577429	0.86[EUR][1000 genomes]
rs2577430	0.86[EUR][1000 genomes]
rs2577432	0.86[EUR][1000 genomes]
rs2577433	0.86[EUR][1000 genomes]
rs2577434	0.87[ASN][1000 genomes]
rs2577435	0.86[EUR][1000 genomes]
rs2577436	0.86[EUR][1000 genomes]
rs2577437	0.86[EUR][1000 genomes]
rs2577438	0.86[EUR][1000 genomes]
rs2577439	0.86[EUR][1000 genomes]
rs2577440	0.84[EUR][1000 genomes]
rs2577442	0.84[EUR][1000 genomes]
rs2577443	0.85[EUR][1000 genomes]
rs2577445	0.80[EUR][1000 genomes]
rs2577446	0.80[EUR][1000 genomes]
rs2577528	0.80[EUR][1000 genomes]
rs2577530	0.80[EUR][1000 genomes]
rs2577533	0.80[EUR][1000 genomes]
rs2577534	0.80[EUR][1000 genomes]
rs2577535	0.80[EUR][1000 genomes]
rs2577536	0.80[EUR][1000 genomes]
rs2577537	0.80[EUR][1000 genomes]
rs2577538	0.81[EUR][1000 genomes]
rs2577542	0.86[EUR][1000 genomes]
rs2577543	0.86[EUR][1000 genomes]
rs2577544	0.86[EUR][1000 genomes]
rs2577545	0.86[EUR][1000 genomes]
rs2577546	0.86[EUR][1000 genomes]
rs2577547	0.86[EUR][1000 genomes]
rs3094874	0.84[EUR][1000 genomes]
rs3098299	0.81[EUR][1000 genomes]
rs3098300	0.86[EUR][1000 genomes]
rs35386300	0.86[EUR][1000 genomes]
rs35779465	0.84[EUR][1000 genomes]
rs35869181	0.84[EUR][1000 genomes]
rs36155285	0.82[EUR][1000 genomes]
rs36188905	0.84[EUR][1000 genomes]
rs36191603	0.84[EUR][1000 genomes]
rs36192465	0.86[EUR][1000 genomes]
rs62399671	0.86[EUR][1000 genomes]
rs62399676	0.82[EUR][1000 genomes]
rs62399681	0.86[EUR][1000 genomes]
rs62399682	0.86[EUR][1000 genomes]
rs62399683	0.83[EUR][1000 genomes]
rs62399685	0.86[EUR][1000 genomes]
rs67198161	0.86[EUR][1000 genomes]
rs6861986	0.86[EUR][1000 genomes]
rs6881009	0.86[EUR][1000 genomes]
rs6881032	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882839	chr5:128205828-128390167	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv882840	chr5:128205828-128428962	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830485	chr5:128298622-128480492	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
4	nsv882841	chr5:128301971-128400356	Flanking Bivalent TSS/Enh Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv882842	chr5:128301971-128552706	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:128303400-128319400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr5:128309600-128338200	Weak transcription	Left Ventricle	heart
3	chr5:128312600-128313200	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr5:128312600-128314200	Enhancers	Fetal Heart	heart
5	chr5:128312800-128313200	Enhancers	Brain Cingulate Gyrus	brain
6	chr5:128313000-128313200	Enhancers	Brain Hippocampus Middle	brain

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