Variant report

Variant	rs2577537
Chromosome Location	chr5:128300994-128300995
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:54)
CpG islands
(count:61)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:54 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr5:128300684-128301324	H1-hESC	embryonic stem cell:	n/a	n/a
2	POLR2A	chr5:128300869-128301078	H1-hESC	embryonic stem cell:	n/a	n/a
3	CTCF	chr5:128300884-128300998	H1-hESC	embryonic stem cell:	n/a	n/a
4	MYC	chr5:128300599-128301350	NB4	blood:	n/a	n/a
5	YY1	chr5:128300810-128301019	H1-hESC	embryonic stem cell:	n/a	chr5:128300990-128300999 chr5:128300896-128300910 chr5:128300899-128300908
6	POLR2A	chr5:128300780-128301242	ECC-1	luminal epithelium:	n/a	n/a
7	UBTF	chr5:128300737-128301125	K562	blood:	n/a	n/a
8	POLR2A	chr5:128300824-128301231	MCF10A-Er-Src	breast:	n/a	n/a
9	TAF1	chr5:128300583-128301090	H1-hESC	embryonic stem cell:	n/a	n/a
10	E2F6	chr5:128300681-128300999	K562	blood:	n/a	chr5:128300707-128300716 chr5:128300899-128300908
11	MYC	chr5:128300877-128301130	MCF-7	breast:	n/a	n/a
12	TCF12	chr5:128300691-128301266	ECC-1	luminal epithelium:	n/a	n/a
13	MAX	chr5:128300557-128301260	ECC-1	luminal epithelium:	n/a	n/a
14	POLR2A	chr5:128300610-128301246	ECC-1	luminal epithelium:	n/a	n/a
15	MXI1	chr5:128300866-128301108	H1-hESC	embryonic stem cell:	n/a	n/a
16	POLR2A	chr5:128300905-128301331	MCF10A-Er-Src	breast:	n/a	n/a
17	POLR2A	chr5:128300674-128301092	H1-hESC	embryonic stem cell:	n/a	n/a
18	MAX	chr5:128300631-128301392	MCF-7	breast:	n/a	n/a
19	RCOR1	chr5:128300692-128301671	K562	blood:	n/a	n/a
20	MYC	chr5:128300690-128301070	K562	blood:	n/a	n/a
21	CTBP2	chr5:128300701-128302462	H1-hESC	embryonic stem cell:	n/a	n/a
22	JUND	chr5:128300766-128301286	K562	blood:	n/a	n/a
23	MAX	chr5:128300713-128301222	NB4	blood:	n/a	n/a
24	SIN3A	chr5:128300675-128301610	H1-hESC	embryonic stem cell:	n/a	chr5:128300893-128300906
25	POLR2A	chr5:128300794-128301253	H1-hESC	embryonic stem cell:	n/a	n/a
26	MXI1	chr5:128300150-128301590	SK-N-SH	brain:	n/a	n/a
27	UBTF	chr5:128300737-128301025	K562	blood:	n/a	n/a
28	GABPA	chr5:128300784-128301085	K562	blood:	n/a	n/a
29	POLR2A	chr5:128300955-128301269	MCF-7	breast:	n/a	n/a
30	CHD1	chr5:128300911-128300999	H1-hESC	embryonic stem cell:	n/a	n/a
31	KAP1	chr5:128300733-128301462	HEK293	kidney:	n/a	n/a
32	MAX	chr5:128300512-128301266	ECC-1	luminal epithelium:	n/a	n/a
33	MAZ	chr5:128300776-128301297	K562	blood:	n/a	n/a
34	ZBTB7A	chr5:128300693-128301438	ECC-1	luminal epithelium:	n/a	chr5:128300700-128300708
35	POLR2A	chr5:128300960-128301063	MCF-7	breast:	n/a	n/a
36	RAD21	chr5:128300755-128301138	H1-hESC	embryonic stem cell:	n/a	n/a
37	MYC	chr5:128300824-128301223	MCF-7	breast:	n/a	n/a
38	TEAD4	chr5:128300642-128301024	H1-hESC	embryonic stem cell:	n/a	n/a
39	CTCF	chr5:128300920-128301070	SK-N-SH_RA	brain:	n/a	n/a
40	MAX	chr5:128300743-128301508	H1-hESC	embryonic stem cell:	n/a	n/a
41	POLR2A	chr5:128300662-128301361	HCT-116	colon:	n/a	n/a
42	POLR2A	chr5:128300775-128301143	MCF-7	breast:	n/a	n/a
43	ZBTB7A	chr5:128300862-128301020	K562	blood:	n/a	n/a
44	CTCF	chr5:128300880-128301030	SK-N-SH_RA	brain:	n/a	n/a
45	HMGN3	chr5:128300683-128300998	K562	blood:	n/a	n/a
46	TBP	chr5:128300785-128301223	H1-hESC	embryonic stem cell:	n/a	n/a
47	POLR2A	chr5:128300632-128301382	HCT-116	colon:	n/a	n/a
48	BACH1	chr5:128300727-128301390	H1-hESC	embryonic stem cell:	n/a	n/a
49	ZNF263	chr5:128300640-128302203	HEK293-T-REx	kidney:	n/a	chr5:128300888-128300897 chr5:128300824-128300833
50	MAX	chr5:128300683-128301174	K562	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr5:128300967-128301017	NT2-D1	testis:	n/a
2	chr5:128300967-128301017	AG10803	skin:	n/a
3	chr5:128300967-128301017	HepG2	liver:	n/a
4	chr5:128300967-128301017	AG09309	skin:	n/a
5	chr5:128300967-128301017	SK-N-MC	brain:	n/a
6	chr5:128300967-128301017	NH-A	brain:	n/a
7	chr5:128300967-128301017	AG04449	skin:	fetal
8	chr5:128300967-128301017	Jurkat	blood:	n/a
9	chr5:128300967-128301017	LNCaP	prostate:	n/a
10	chr5:128300967-128301017	HL-60	blood:	n/a
11	chr5:128300967-128301017	BJ	skin:	n/a
12	chr5:128300967-128301017	HPAEpiC	pulmonary alveolar:	n/a
13	chr5:128300967-128301017	HEEpiC	esophagus:	n/a
14	chr5:128300967-128301017	NHDF-neo	bronchial:	n/a
15	chr5:128300967-128301017	SK-N-SH_RA	brain:	n/a
16	chr5:128300967-128301017	ProgFib	skin:	n/a
17	chr5:128300967-128301017	H1-hESC	embryonic stem cell:	embryo
18	chr5:128300967-128301017	PANC-1	pancreas:	n/a
19	chr5:128300967-128301017	GM12892	blood:	n/a
20	chr5:128300967-128301017	HCT-116	colon:	n/a
21	chr5:128300967-128301017	AG09319	gingival:	n/a
22	chr5:128300967-128301017	NB4	blood:	n/a
23	chr5:128300967-128301017	HCF	heart:	n/a
24	chr5:128300967-128301017	CMK	blood:	n/a
25	chr5:128300967-128301017	A549	lung:	n/a
26	chr5:128300967-128301017	HUVEC	blood vessel:	n/a
27	chr5:128300967-128301017	SAEC	small airway:	n/a
28	chr5:128300967-128301017	Hepatocyte	liver:	n/a
29	chr5:128300967-128301017	GM12891	blood:	n/a
30	chr5:128300967-128301017	AG04450	lung:	fetal
31	chr5:128300967-128301017	SK-N-SH	brain:	n/a
32	chr5:128300967-128301017	GM06990	blood:	n/a
33	chr5:128300967-128301017	GM19239	blood:	n/a
34	chr5:128300967-128301017	BE2_C	brain:	n/a
35	chr5:128300967-128301017	RPTEC	kidney:	n/a
36	chr5:128300967-128301017	HMEC	breast:	n/a
37	chr5:128300967-128301017	HRE	kidney:	n/a
38	chr5:128300967-128301017	ovcar-3	ovarian:	n/a
39	chr5:128300967-128301017	IMR90	lung:	fetal
40	chr5:128300967-128301017	PrEC	prostate:	n/a
41	chr5:128300967-128301017	U87	brain:	n/a
42	chr5:128300967-128301017	HEK293	kidney:	embryo
43	chr5:128300967-128301017	HRCEpiC	kidney:	n/a
44	chr5:128300967-128301017	MCF10A-Er-Src	breast:	n/a
45	chr5:128300967-128301017	HCPEpiC	choroid plexus:	n/a
46	chr5:128300967-128301017	HRPEpiC	eye:	n/a
47	chr5:128300967-128301017	Caco-2	colon:	n/a
48	chr5:128300967-128301017	GM12878	blood:	n/a
49	chr5:128300967-128301017	NHBE	bronchial:	n/a
50	chr5:128300967-128301017	PFSK-1	brain:	n/a

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:128299750..128303179-chr5:128428591..128431385,3	MCF-7	breast:

No data

Variant related genes	Relation type
SLC27A6	TF binding region
SLC27A6	CpG island
ENSG00000066583	Chromatin interaction

Extended variants
information (count: 137 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:134)

rs_ID	r²[population]
rs11241987	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11740215	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11743171	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12189398	0.81[ASN][1000 genomes]
rs12518184	0.81[ASN][1000 genomes]
rs13166325	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13169590	0.83[ASN][1000 genomes]
rs13190393	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1421890	0.91[ASN][1000 genomes]
rs17616784	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17616974	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17616991	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17678874	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1898543	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1898544	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1898549	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2526196	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2526201	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2526202	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2526209	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2526210	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2526211	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2526212	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2526213	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2526214	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2526225	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2526239	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2526240	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2526241	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2526243	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2526245	0.95[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2526247	0.95[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2526248	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2526249	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2526251	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2526253	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2526257	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2545015	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2577399	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2577402	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2577403	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2577423	0.80[EUR][1000 genomes]
rs2577426	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2577428	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2577429	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2577430	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2577432	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2577433	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2577435	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2577436	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2577437	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2577438	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2577439	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2577440	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2577442	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2577443	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2577445	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2577446	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2577477	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2577504	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2577506	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2577507	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2577508	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2577509	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2577510	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2577511	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2577512	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2577513	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2577514	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2577528	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2577529	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2577530	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2577533	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2577534	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2577535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2577536	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2577538	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577540	0.95[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2577541	0.80[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2577542	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2577543	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2577544	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2577545	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2577546	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2577547	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2577555	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2577556	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2577560	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2577561	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2577562	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3094874	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3098299	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3098300	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34075274	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34299037	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34683252	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34813132	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34831887	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35044703	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35386300	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35388070	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35590597	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs35696888	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35767068	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35779465	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35869181	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs36139771	0.87[AMR][1000 genomes]
rs36147677	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs36149993	0.85[AMR][1000 genomes]
rs36155285	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs36157890	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs36171961	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs36175029	0.85[AMR][1000 genomes]
rs36188905	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs36191603	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs36192190	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs36192465	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62391271	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62391272	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62391297	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62399671	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62399676	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62399681	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62399682	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62399683	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62399685	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs67198161	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6861986	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6881009	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6881032	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71587998	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs71587999	0.81[AMR][1000 genomes]
rs71592877	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7349831	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882839	chr5:128205828-128390167	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv882840	chr5:128205828-128428962	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830485	chr5:128298622-128480492	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:128300400-128301200	Active TSS	Primary hematopoietic stem cells	blood
2	chr5:128300400-128301400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr5:128300400-128301600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
4	chr5:128300400-128301600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
5	chr5:128300400-128301600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr5:128300400-128301800	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr5:128300400-128301800	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr5:128300400-128301800	Active TSS	Brain Substantia Nigra	brain
9	chr5:128300400-128301800	Active TSS	Pancreatic Islets	Pancreatic Islet
10	chr5:128300400-128302000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
11	chr5:128300400-128302000	Active TSS	K562	blood
12	chr5:128300400-128302200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
13	chr5:128300400-128302200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
14	chr5:128300400-128302200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
15	chr5:128300400-128302200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
16	chr5:128300600-128301000	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
17	chr5:128300600-128301000	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
18	chr5:128300600-128301000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr5:128300600-128301000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr5:128300600-128301000	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
21	chr5:128300600-128301000	Flanking Active TSS	Esophagus	oesophagus
22	chr5:128300600-128301000	Flanking Active TSS	Placenta	Placenta
23	chr5:128300600-128301000	Flanking Active TSS	HMEC	breast
24	chr5:128300600-128301000	Flanking Bivalent TSS/Enh	HUVEC	blood vessel
25	chr5:128300600-128301200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
26	chr5:128300600-128301200	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr5:128300600-128301200	Active TSS	H9 Cell Line	embryonic stem cell
28	chr5:128300600-128301200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr5:128300600-128301200	Active TSS	Adipose Nuclei	Adipose
30	chr5:128300600-128301200	Active TSS	Brain Anterior Caudate	brain
31	chr5:128300600-128301200	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
32	chr5:128300600-128301200	Active TSS	Brain Inferior Temporal Lobe	brain
33	chr5:128300600-128301200	Bivalent/Poised TSS	Monocytes-CD14+_RO01746	blood
34	chr5:128300600-128301400	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr5:128300600-128301400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr5:128300600-128301400	Bivalent/Poised TSS	Muscle Satellite Cultured Cells	--
37	chr5:128300600-128301400	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
38	chr5:128300600-128301400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr5:128300600-128301400	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr5:128300600-128301400	Active TSS	Brain Angular Gyrus	brain
41	chr5:128300600-128301400	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
42	chr5:128300600-128301400	Bivalent Enhancer	Fetal Brain Male	brain
43	chr5:128300600-128301400	Bivalent/Poised TSS	Fetal Lung	lung
44	chr5:128300600-128301400	Active TSS	Psoas Muscle	Psoas
45	chr5:128300600-128301400	Bivalent/Poised TSS	A549	lung
46	chr5:128300600-128301600	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr5:128300600-128301600	Active TSS	Brain Cingulate Gyrus	brain
48	chr5:128300600-128301600	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
49	chr5:128300600-128301600	Bivalent/Poised TSS	Fetal Intestine Large	intestine
50	chr5:128300600-128301600	Bivalent/Poised TSS	Fetal Intestine Small	intestine

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