Variant report

Variant	rs2577508
Chromosome Location	chr5:128270379-128270380
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:128268677..128271311-chr5:128429524..128431668,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000066583	Chromatin interaction

Extended variants
information (count: 138 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:132)

rs_ID	r²[population]
rs11241987	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11740215	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11743171	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12189398	0.83[ASN][1000 genomes]
rs12518184	0.83[ASN][1000 genomes]
rs13166325	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13169590	0.86[ASN][1000 genomes]
rs13190393	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1421890	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17616784	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17616974	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17616991	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17678874	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1898543	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1898544	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1898549	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2526196	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2526201	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2526202	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2526209	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2526210	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2526211	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2526212	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2526213	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2526214	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2526225	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2526239	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2526240	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2526241	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2526243	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2526245	0.94[ASN][1000 genomes]
rs2526247	0.92[ASN][1000 genomes]
rs2526248	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2526249	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2526251	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2526253	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2526257	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2545015	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2577399	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577402	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577403	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577426	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2577428	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2577429	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2577430	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2577432	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2577433	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2577435	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2577436	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2577437	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2577438	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2577439	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2577440	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2577442	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2577443	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2577445	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577446	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577473	0.80[AFR][1000 genomes]
rs2577477	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2577495	0.83[AFR][1000 genomes]
rs2577496	0.83[AFR][1000 genomes]
rs2577504	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577506	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577509	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577510	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577511	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577512	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577513	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577514	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577528	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577529	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2577530	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577533	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577534	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577535	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577536	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2577537	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2577538	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2577540	0.94[ASN][1000 genomes]
rs2577541	0.92[ASN][1000 genomes]
rs2577542	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2577543	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2577544	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2577545	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2577546	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2577547	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2577555	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577556	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577560	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577561	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577562	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3094874	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3098299	0.80[EUR][1000 genomes]
rs3098300	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34075274	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34299037	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34683252	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34813132	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34831887	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35044703	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35386300	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35388070	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35590597	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35696888	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35767068	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35779465	0.83[EUR][1000 genomes]
rs35869181	0.83[EUR][1000 genomes]
rs36139771	0.81[AMR][1000 genomes]
rs36147677	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs36155285	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs36157890	0.81[AMR][1000 genomes]
rs36188905	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs36191603	0.84[EUR][1000 genomes]
rs36192465	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62391271	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62391272	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62391297	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62399671	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62399676	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62399681	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62399682	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62399683	0.82[EUR][1000 genomes]
rs62399685	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs67198161	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6861986	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6881009	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6881032	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs71587998	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs71587999	0.82[ASN][1000 genomes]
rs71592877	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7349831	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462443	chr5:128172808-128298437	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv599700	chr5:128172808-128298437	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv882837	chr5:128200502-128287228	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv882838	chr5:128203439-128287228	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv882839	chr5:128205828-128390167	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv882840	chr5:128205828-128428962	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2577508	SLC27A6	cis	Nerve Tibial	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:128269200-128270400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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