Variant report

Variant	rs2577496
Chromosome Location	chr5:128264634-128264635
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11952436	0.82[JPT][hapmap]
rs13190393	0.85[CEU][hapmap];0.84[YRI][hapmap]
rs1496347	0.82[JPT][hapmap]
rs1833549	0.81[CEU][hapmap]
rs1895180	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2522376	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2522377	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2522378	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2522383	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2522385	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2526177	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2526196	0.82[AFR][1000 genomes]
rs2526201	0.83[AFR][1000 genomes]
rs2526202	0.83[AFR][1000 genomes]
rs2526205	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2526241	0.84[YRI][hapmap]
rs2526243	0.83[CEU][hapmap]
rs2526251	0.80[CEU][hapmap]
rs2526255	0.92[CEU][hapmap]
rs2526256	0.86[EUR][1000 genomes]
rs2526258	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2545015	0.84[CEU][hapmap]
rs2545022	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2545024	1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2577424	0.96[CEU][hapmap];0.82[JPT][hapmap]
rs2577468	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2577470	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2577471	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2577472	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2577473	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2577481	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2577487	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577488	0.87[EUR][1000 genomes]
rs2577489	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2577492	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577495	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577504	0.84[AFR][1000 genomes]
rs2577506	0.83[AFR][1000 genomes]
rs2577507	0.83[AFR][1000 genomes]
rs2577508	0.83[AFR][1000 genomes]
rs2577509	0.83[AFR][1000 genomes]
rs2577510	0.83[AFR][1000 genomes]
rs2577511	0.83[AFR][1000 genomes]
rs2577512	0.83[AFR][1000 genomes]
rs2577513	0.82[AFR][1000 genomes]
rs2577514	0.82[AFR][1000 genomes]
rs2577546	0.80[CEU][hapmap]
rs257902	0.88[CEU][hapmap]
rs35590597	0.80[AFR][1000 genomes]
rs4835961	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62391271	0.84[AFR][1000 genomes]
rs62391272	0.85[AFR][1000 genomes]
rs6859755	0.84[CEU][hapmap]
rs7702784	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462443	chr5:128172808-128298437	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv599700	chr5:128172808-128298437	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv882837	chr5:128200502-128287228	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv882838	chr5:128203439-128287228	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv882839	chr5:128205828-128390167	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv882840	chr5:128205828-128428962	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2577496	SLC27A6	cis	Nerve Tibial	GTEx

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:128260200-128264800	Enhancers	Fetal Heart	heart
2	chr5:128261800-128265200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr5:128262400-128264800	Enhancers	Primary hematopoietic stem cells	blood
4	chr5:128262400-128265000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr5:128262400-128265000	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr5:128262400-128265200	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr5:128264400-128264800	Enhancers	Brain Cingulate Gyrus	brain
8	chr5:128264600-128264800	Enhancers	Right Ventricle	heart
9	chr5:128264600-128265400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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