Variant report

Variant	rs11819865
Chromosome Location	chr11:94042879-94042880
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11828062	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11828171	1.00[ASN][1000 genomes]
rs13447604	1.00[AMR][1000 genomes]
rs13447706	1.00[JPT][hapmap]
rs16920146	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2012447	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55784852	1.00[EUR][1000 genomes]
rs56292855	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58904026	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61742524	1.00[EUR][1000 genomes]
rs7925833	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7935583	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7937538	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7950246	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523083	chr11:93962121-94150790	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv832233	chr11:93981434-94158471	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94038000-94045600	Weak transcription	Colon Smooth Muscle	Colon
2	chr11:94042800-94043600	Enhancers	HMEC	breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links