Variant report

Variant	rs61742524
Chromosome Location	chr11:94038811-94038812
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11819865	1.00[EUR][1000 genomes]
rs11828062	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11828171	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16920146	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2012447	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55784852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56292855	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58904026	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7925833	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7935583	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7937538	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7950246	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523083	chr11:93962121-94150790	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv832233	chr11:93981434-94158471	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94036600-94041000	Weak transcription	Right Atrium	heart
2	chr11:94036600-94041800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:94036800-94039400	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr11:94037400-94039000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr11:94037400-94039000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:94037400-94039000	Enhancers	Fetal Muscle Trunk	muscle
7	chr11:94038000-94039000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr11:94038000-94039200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:94038000-94045600	Weak transcription	Colon Smooth Muscle	Colon
10	chr11:94038200-94039000	Enhancers	NHEK	skin
11	chr11:94038200-94039200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr11:94038200-94039200	Enhancers	HMEC	breast
13	chr11:94038400-94039200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr11:94038600-94039000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
15	chr11:94038800-94039000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr11:94038800-94039000	Enhancers	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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