Variant report

Variant	rs11820802
Chromosome Location	chr11:120478361-120478362
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11217927	1.00[AMR][1000 genomes]
rs11217995	1.00[AMR][1000 genomes]
rs11821047	1.00[AMR][1000 genomes]
rs11825192	1.00[AMR][1000 genomes]
rs11825478	0.89[AFR][1000 genomes]
rs12271466	1.00[AMR][1000 genomes]
rs12278536	1.00[AMR][1000 genomes]
rs12288893	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1036102	chr11:120442895-120498908	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv468881	chr11:120446830-120551100	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv556476	chr11:120446830-120551100	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120468600-120479400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr11:120468600-120479400	Weak transcription	Brain Substantia Nigra	brain
3	chr11:120471000-120479400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:120471200-120479200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr11:120471400-120479400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr11:120472600-120479200	Weak transcription	Fetal Kidney	kidney
7	chr11:120474600-120478600	Weak transcription	Ovary	ovary
8	chr11:120475000-120481400	Enhancers	Fetal Lung	lung
9	chr11:120476400-120482600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:120477600-120480200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:120478000-120478400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr11:120478000-120478600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
13	chr11:120478000-120478800	Enhancers	Fetal Brain Male	brain
14	chr11:120478200-120478400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
15	chr11:120478200-120478600	Weak transcription	GM12878-XiMat	blood
16	chr11:120478200-120481600	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr11:120478200-120482000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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