Variant report

Variant	rs11821063
Chromosome Location	chr11:85319484-85319485
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11820491	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11820534	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11821118	0.87[AMR][1000 genomes]
rs11822495	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11822876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11822925	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11823655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11824926	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11826281	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11827119	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35243130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55684820	0.87[AMR][1000 genomes]
rs55923329	0.87[AMR][1000 genomes]
rs57114118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57770086	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58715908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59259888	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60537342	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60882356	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61453055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7928325	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7935017	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7952496	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	nsv898047	chr11:85180409-85377707	Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	esv2758279	chr11:85180480-85603988	Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
5	esv2759845	chr11:85180480-85603988	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
6	nsv898048	chr11:85206156-85404138	Flanking Active TSS Genic enhancers Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85316200-85319800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr11:85317800-85337600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:85319200-85319800	Active TSS	iPS-20b Cell Line	embryonic stem cell
4	chr11:85319400-85319800	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr11:85319400-85319800	Active TSS	iPS-15b Cell Line	embryonic stem cell
6	chr11:85319400-85320000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr11:85319400-85320000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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