Variant report

Variant	rs11827119
Chromosome Location	chr11:85195085-85195086
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:46)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:46 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:85193729..85196593-chr2:133010514..133013451,3	K562	blood:
2	chr11:85194519..85195708-chr17:33477647..33478310,15	MCF-7	breast:
3	chr11:85194556..85195599-chr21:9825626..9826659,3	MCF-7	breast:
4	chr11:85194540..85195181-chr17:33477664..33478330,3	HCT-116	colon:
5	chr11:85193597..85195196-chr17:33476655..33478347,10	MCF-7	breast:
6	chr11:85193664..85196579-chr19:24184471..24186975,3	MCF-7	breast:
7	chr11:85194707..85195726-chr19:24185012..24186176,4	MCF-7	breast:
8	chr11:85193727..85196636-chr17:31148107..31149878,3	MCF-7	breast:
9	chr11:85195049..85196754-chr19:24184306..24186751,3	K562	blood:
10	chr11:85193624..85196703-chr2:133010749..133014388,3	K562	blood:
11	chr11:85193525..85196750-chr20:26187839..26191543,6	K562	blood:
12	chr11:85193511..85196736-chr17:33476647..33479728,15	K562	blood:
13	chr11:85193587..85195104-chr4:187024539..187026040,2	K562	blood:
14	chr11:85194535..85195243-chr17:33477642..33478335,12	MCF-7	breast:
15	chr11:85194537..85195256-chr17:33477651..33478689,13	K562	blood:
16	chr11:85194566..85195163-chr12:109181096..109181616,2	MCF-7	breast:
17	chr11:85193614..85195226-chr21:9825927..9828995,5	MCF-7	breast:
18	chr11:85193537..85196743-chr16:33959805..33967587,15	K562	blood:
19	chr11:85194535..85195256-chr17:33477667..33478335,18	MCF-7	breast:
20	chr11:85195072..85196733-chr9:79185153..79186653,2	K562	blood:
21	chr11:85195036..85195776-chr2:71565795..71566299,2	MCF-7	breast:
22	chr1:91851562..91854585-chr11:85195040..85196753,3	K562	blood:
23	chr11:85193599..85196549-chr19:24184495..24187673,3	K562	blood:
24	chr11:85193718..85196622-chr21:9824164..9827074,2	MCF-7	breast:
25	chr11:85193649..85195183-chrX:108296303..108299199,2	K562	blood:
26	chr11:85194634..85195770-chr21:9826689..9827668,3	MCF-7	breast:
27	chr11:85193550..85196726-chr21:9824306..9828726,11	K562	blood:
28	chr11:85195071..85195734-chr6:137143975..137144475,2	K562	blood:
29	chr11:85195062..85195778-chr6:144328873..144329374,2	HCT-116	colon:
30	chr11:85193550..85196769-chr21:9824428..9828726,11	K562	blood:
31	chr11:85193566..85195120-chr16:33965483..33967840,2	MCF-7	breast:
32	chr11:85194574..85195759-chr19:24184744..24186176,10	MCF-7	breast:
33	chr11:85195015..85195732-chr21:9826213..9827241,3	MCF-7	breast:
34	chr11:85194679..85195667-chr19:24185002..24186153,3	MCF-7	breast:
35	chr11:85193628..85196531-chr2:133032953..133034631,2	K562	blood:
36	chr11:85194752..85195535-chr2:115694651..115695616,2	MCF-7	breast:
37	chr11:85194541..85195128-chr16:33965453..33966369,3	MCF-7	breast:
38	chr11:85194561..85195749-chr19:24185001..24186153,7	MCF-7	breast:
39	chr1:156185088..156188066-chr11:85193605..85195110,2	K562	blood:
40	chr11:85193623..85195251-chr6:110677855..110679355,2	MCF-7	breast:
41	chr11:85193511..85196736-chr17:33476657..33479798,16	K562	blood:
42	chr11:85194519..85195599-chr17:33477658..33478328,13	MCF-7	breast:
43	chr10:24497863..24498383-chr11:85195069..85195755,2	MCF-7	breast:
44	chr11:85195041..85196746-chr2:230044008..230046987,2	K562	blood:
45	chr11:85194756..85195260-chr2:115694618..115695142,2	MCF-7	breast:
46	chr11:85193576..85195251-chr17:33476660..33478297,7	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000227195	Chromatin interaction
ENSG00000120549	Chromatin interaction
ENSG00000264462	Chromatin interaction
ENSG00000264063	Chromatin interaction
ENSG00000226958	Chromatin interaction
ENSG00000053328	Chromatin interaction
ENSG00000201966	Chromatin interaction
ENSG00000256642	Chromatin interaction
ENSG00000207986	Chromatin interaction
ENSG00000200434	Chromatin interaction
ENSG00000202174	Chromatin interaction
ENSG00000109794	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11820491	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11820534	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11821063	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11822495	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11822876	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11822925	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11823655	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11824926	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11826281	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35243130	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55684820	0.87[AMR][1000 genomes]
rs55923329	0.87[AMR][1000 genomes]
rs57114118	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57770086	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58715908	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59259888	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60537342	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60882356	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61453055	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7928325	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7935017	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7952496	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv898044	chr11:84895033-85220773	ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
4	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
5	nsv1035905	chr11:85130543-85220773	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv1050363	chr11:85163437-85293233	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	nsv541111	chr11:85163437-85293233	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
8	nsv898046	chr11:85180409-85300458	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
9	nsv898047	chr11:85180409-85377707	Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
10	esv2758279	chr11:85180480-85603988	Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
11	esv2759845	chr11:85180480-85603988	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
12	esv3439535	chr11:85195006-85195241	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers	Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
13	esv7274	chr11:85195013-85195186	ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers	Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85194800-85195200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
2	chr11:85194800-85195200	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:85194800-85195200	Flanking Bivalent TSS/Enh	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:85194800-85195200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:85194800-85195200	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr11:85194800-85195200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
7	chr11:85194800-85195200	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr11:85194800-85195200	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
9	chr11:85194800-85195200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
10	chr11:85194800-85195200	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:85194800-85195200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr11:85194800-85195200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr11:85194800-85195200	ZNF genes & repeats	Primary B cells from peripheral blood	blood
14	chr11:85194800-85195200	Flanking Bivalent TSS/Enh	Primary T helper memory cells from peripheral blood 2	blood
15	chr11:85194800-85195200	Flanking Bivalent TSS/Enh	Primary T helper naive cells from peripheral blood	blood
16	chr11:85194800-85195200	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
17	chr11:85194800-85195200	Flanking Bivalent TSS/Enh	Primary T helper memory cells from peripheral blood 1	blood
18	chr11:85194800-85195200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
19	chr11:85194800-85195200	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
20	chr11:85194800-85195200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
21	chr11:85194800-85195200	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
22	chr11:85194800-85195200	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr11:85194800-85195200	Flanking Bivalent TSS/Enh	Primary T killer naive cells fromperipheralblood	blood
24	chr11:85194800-85195200	Flanking Bivalent TSS/Enh	Primary T killer memory cells from peripheral blood	blood
25	chr11:85194800-85195200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr11:85194800-85195200	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
27	chr11:85194800-85195200	ZNF genes & repeats	Liver	Liver
28	chr11:85194800-85195200	ZNF genes & repeats	Brain Angular Gyrus	brain
29	chr11:85194800-85195200	ZNF genes & repeats	Brain Cingulate Gyrus	brain
30	chr11:85194800-85195200	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
31	chr11:85194800-85195200	Flanking Bivalent TSS/Enh	Brain Inferior Temporal Lobe	brain
32	chr11:85194800-85195200	Flanking Bivalent TSS/Enh	Brain Dorsolateral Prefrontal Cortex	brain
33	chr11:85194800-85195200	ZNF genes & repeats	Brain Substantia Nigra	brain
34	chr11:85194800-85195200	ZNF genes & repeats	Colon Smooth Muscle	Colon
35	chr11:85194800-85195200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
36	chr11:85194800-85195200	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
37	chr11:85194800-85195200	ZNF genes & repeats	Fetal Brain Male	brain
38	chr11:85194800-85195200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
39	chr11:85194800-85195200	Flanking Bivalent TSS/Enh	Fetal Lung	lung
40	chr11:85194800-85195200	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 29	rectum
41	chr11:85194800-85195200	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
42	chr11:85194800-85195200	Flanking Bivalent TSS/Enh	Rectal Smooth Muscle	rectum
43	chr11:85194800-85195200	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
44	chr11:85194800-85195200	Flanking Bivalent TSS/Enh	Stomach Mucosa	stomach
45	chr11:85194800-85195200	ZNF genes & repeats	Hela-S3	cervix
46	chr11:85194800-85195200	ZNF genes & repeats	HMEC	breast
47	chr11:85194800-85195200	ZNF genes & repeats	HSMM	muscle
48	chr11:85194800-85195200	ZNF genes & repeats	NH-A	brain
49	chr11:85194800-85195200	ZNF genes & repeats	NHEK	skin
50	chr11:85194800-85195200	ZNF genes & repeats	NHLF	lung

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