Variant report

Variant	rs11821839
Chromosome Location	chr11:46438524-46438525
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11821779	0.91[AFR][1000 genomes]
rs11821877	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[AFR][1000 genomes]
rs11822150	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[AFR][1000 genomes]
rs11823016	1.00[AFR][1000 genomes]
rs11824513	1.00[AFR][1000 genomes]
rs11826518	1.00[ASW][hapmap]
rs34261502	1.00[CEU][hapmap]
rs4447137	0.91[AFR][1000 genomes]
rs7939371	0.91[AFR][1000 genomes]
rs7943392	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv554202	chr11:46334239-46469900	Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv309	chr11:46399678-46440503	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1050614	chr11:46414720-46496732	Weak transcription Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46417000-46444400	Strong transcription	Fetal Stomach	stomach
2	chr11:46417200-46439600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr11:46417800-46463400	Weak transcription	Fetal Brain Male	brain
4	chr11:46421000-46444800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr11:46421000-46447000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr11:46423400-46439600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr11:46423400-46444600	Strong transcription	Stomach Smooth Muscle	stomach
8	chr11:46425400-46439600	Strong transcription	Liver	Liver
9	chr11:46426800-46468800	Weak transcription	Psoas Muscle	Psoas
10	chr11:46427000-46442800	Weak transcription	Right Atrium	heart
11	chr11:46427000-46444600	Strong transcription	Lung	lung
12	chr11:46428000-46443800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr11:46428800-46440600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr11:46429000-46439600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr11:46429000-46439600	Strong transcription	GM12878-XiMat	blood
16	chr11:46429200-46446400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr11:46430200-46450600	Weak transcription	HUVEC	blood vessel
18	chr11:46430200-46456000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr11:46430600-46438800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:46430600-46451600	Weak transcription	NHDF-Ad	bronchial
21	chr11:46430600-46455000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr11:46433000-46439800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr11:46433000-46443200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr11:46433200-46449200	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr11:46433600-46439200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr11:46433600-46439400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr11:46433600-46439600	Strong transcription	Colonic Mucosa	Colon
28	chr11:46433600-46440800	Strong transcription	Primary B cells from peripheral blood	blood
29	chr11:46433600-46444200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr11:46433600-46466400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr11:46433800-46438600	Strong transcription	Brain Hippocampus Middle	brain
32	chr11:46433800-46439800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr11:46434000-46439600	Strong transcription	Primary neutrophils fromperipheralblood	blood
34	chr11:46434000-46439600	Strong transcription	Duodenum Smooth Muscle	Duodenum
35	chr11:46434200-46438600	Strong transcription	Brain Anterior Caudate	brain
36	chr11:46434200-46439200	Enhancers	Fetal Heart	heart
37	chr11:46434200-46439600	Strong transcription	Brain Inferior Temporal Lobe	brain
38	chr11:46434200-46439600	Strong transcription	Placenta	Placenta
39	chr11:46434200-46440000	Strong transcription	Rectal Mucosa Donor 29	rectum
40	chr11:46434200-46442000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr11:46434200-46444800	Strong transcription	Primary B cells from cord blood	blood
42	chr11:46434400-46438600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr11:46434400-46438600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr11:46434400-46438600	Strong transcription	Aorta	Aorta
45	chr11:46434400-46439000	Strong transcription	Rectal Smooth Muscle	rectum
46	chr11:46434400-46439600	Strong transcription	Brain Substantia Nigra	brain
47	chr11:46434600-46439600	Strong transcription	Primary monocytes fromperipheralblood	blood
48	chr11:46434600-46439600	Strong transcription	Skeletal Muscle Female	skeletal muscle
49	chr11:46434600-46439800	Strong transcription	Pancreas	Pancrea
50	chr11:46434600-46441200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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