Variant report

Variant	rs7943392
Chromosome Location	chr11:46370961-46370962
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:46257250..46262210-chr11:46367431..46371476,7	K562	blood:
2	chr11:46370608..46372657-chr11:46396272..46398453,2	K562	blood:
3	chr11:46369907..46371669-chr11:46372067..46373780,2	MCF-7	breast:
4	chr11:46368689..46375486-chr11:46400770..46406098,12	K562	blood:
5	chr11:46369976..46372560-chr11:46412510..46415040,2	K562	blood:
6	chr11:46257890..46267047-chr11:46362753..46375455,17	K562	blood:
7	chr11:46362000..46364910-chr11:46370299..46373076,2	K562	blood:
8	chr11:46366347..46371334-chr11:46384499..46389085,13	MCF-7	breast:
9	chr11:46197522..46200380-chr11:46369487..46372078,2	K562	blood:
10	chr11:46370537..46375565-chr11:46394528..46400368,5	MCF-7	breast:
11	chr11:46143580..46145236-chr11:46369479..46372129,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000110492	Chromatin interaction
ENSG00000264102	Chromatin interaction
ENSG00000254639	Chromatin interaction
ENSG00000149091	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11821839	1.00[AFR][1000 genomes]
rs11821877	1.00[AFR][1000 genomes]
rs11822150	1.00[AFR][1000 genomes]
rs11823016	1.00[AFR][1000 genomes]
rs11824513	1.00[AFR][1000 genomes]
rs7939371	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv554201	chr11:46281835-46422686	Active TSS Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv825867	chr11:46303184-46425613	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	esv1797501	chr11:46315437-46402521	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	esv1811345	chr11:46317062-46438072	Enhancers Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv554202	chr11:46334239-46469900	Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv897316	chr11:46349631-46417815	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
7	nsv897317	chr11:46363411-46417815	Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46369400-46371000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
2	chr11:46369400-46371000	Flanking Active TSS	Primary hematopoietic stem cells	blood
3	chr11:46369400-46371000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
4	chr11:46369400-46371800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr11:46369400-46372400	Enhancers	Fetal Brain Male	brain
6	chr11:46369600-46371000	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
7	chr11:46369600-46371000	Flanking Active TSS	Duodenum Mucosa	Duodenum
8	chr11:46369600-46371000	Flanking Active TSS	Hela-S3	cervix
9	chr11:46369600-46371200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr11:46369600-46371400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
11	chr11:46369600-46371400	Flanking Active TSS	Dnd41	blood
12	chr11:46369600-46371600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
13	chr11:46369600-46372200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
14	chr11:46369600-46372800	Flanking Active TSS	Primary T cells from cord blood	blood
15	chr11:46369800-46371000	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr11:46369800-46371400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
17	chr11:46369800-46371400	Flanking Active TSS	GM12878-XiMat	blood
18	chr11:46369800-46371600	Flanking Active TSS	Thymus	Thymus
19	chr11:46369800-46371800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
20	chr11:46369800-46372800	Weak transcription	Ovary	ovary
21	chr11:46370000-46371200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr11:46370000-46371400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
23	chr11:46370000-46384000	Weak transcription	Fetal Kidney	kidney
24	chr11:46370000-46395800	Weak transcription	Aorta	Aorta
25	chr11:46370200-46371000	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr11:46370200-46371000	Enhancers	HUVEC	blood vessel
27	chr11:46370200-46371000	Transcr. at gene 5' and 3'	Monocytes-CD14+_RO01746	blood
28	chr11:46370200-46371400	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr11:46370200-46371400	Enhancers	NH-A	brain
30	chr11:46370200-46371600	Enhancers	Primary B cells from peripheral blood	blood
31	chr11:46370200-46371800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
32	chr11:46370200-46372600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr11:46370200-46373400	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
34	chr11:46370200-46375800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
35	chr11:46370400-46371000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr11:46370400-46371000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr11:46370400-46371000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr11:46370400-46371000	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr11:46370400-46371000	Enhancers	HSMMtube	muscle
40	chr11:46370400-46371000	Enhancers	NHDF-Ad	bronchial
41	chr11:46370400-46371000	Enhancers	NHLF	lung
42	chr11:46370400-46371000	Enhancers	Osteobl	bone
43	chr11:46370400-46371200	Enhancers	H1 Cell Line	embryonic stem cell
44	chr11:46370400-46371200	Enhancers	Fetal Muscle Trunk	muscle
45	chr11:46370400-46371400	Enhancers	H9 Cell Line	embryonic stem cell
46	chr11:46370400-46371600	Enhancers	Stomach Mucosa	stomach
47	chr11:46370400-46371800	Enhancers	iPS-15b Cell Line	embryonic stem cell
48	chr11:46370400-46371800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr11:46370400-46371800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
50	chr11:46370400-46371800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links