Variant report

Variant	rs11821949
Chromosome Location	chr11:34368110-34368111
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34243758..34246398-chr11:34366962..34369270,2	MCF-7	breast:
2	chr11:34365763..34368722-chr11:34368922..34370946,2	MCF-7	breast:
3	chr11:34351980..34355833-chr11:34364485..34369065,5	MCF-7	breast:
4	chr11:34182869..34184565-chr11:34366720..34369400,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11827045	1.00[CEU][hapmap]
rs58323950	0.80[AMR][1000 genomes]
rs6484706	1.00[CEU][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes]
rs7116929	0.80[AMR][1000 genomes]
rs7944118	1.00[CEU][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes]
rs7947362	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757435	chr11:34220504-34370236	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759816	chr11:34220504-34370236	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv897205	chr11:34248229-34507213	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv897207	chr11:34253683-34621004	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	nsv897208	chr11:34257064-34562247	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	nsv897209	chr11:34309519-34548906	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	nsv897210	chr11:34349427-34381075	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34360200-34368400	Enhancers	Liver	Liver
2	chr11:34361800-34370800	Weak transcription	GM12878-XiMat	blood
3	chr11:34362600-34370200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr11:34363000-34372400	Enhancers	Fetal Muscle Leg	muscle
5	chr11:34363600-34368800	Enhancers	NHLF	lung
6	chr11:34363800-34368400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr11:34363800-34368600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:34363800-34369000	Enhancers	Left Ventricle	heart
9	chr11:34364000-34369000	Enhancers	Fetal Muscle Trunk	muscle
10	chr11:34364200-34376600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:34364400-34371000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr11:34364600-34368600	Enhancers	HMEC	breast
13	chr11:34364800-34368400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr11:34365000-34369800	Enhancers	Brain Germinal Matrix	brain
15	chr11:34365400-34372200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr11:34365800-34368400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr11:34365800-34368400	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr11:34365800-34368800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr11:34366000-34368200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr11:34366000-34368200	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr11:34366000-34368600	Flanking Active TSS	A549	lung
22	chr11:34366000-34371800	Enhancers	Right Atrium	heart
23	chr11:34366200-34368600	Enhancers	Fetal Brain Male	brain
24	chr11:34366200-34368800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr11:34366200-34369000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr11:34366200-34370800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr11:34366200-34371200	Enhancers	Fetal Stomach	stomach
28	chr11:34366400-34368200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
29	chr11:34366400-34368200	Enhancers	NHDF-Ad	bronchial
30	chr11:34366400-34368400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr11:34366400-34368600	Enhancers	Placenta	Placenta
32	chr11:34366400-34368800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr11:34366400-34374000	Enhancers	Psoas Muscle	Psoas
34	chr11:34366600-34368200	Enhancers	Brain Angular Gyrus	brain
35	chr11:34366600-34368400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr11:34366600-34368400	Enhancers	Brain Cingulate Gyrus	brain
37	chr11:34366600-34368600	Enhancers	Adipose Nuclei	Adipose
38	chr11:34366600-34368600	Enhancers	Brain Anterior Caudate	brain
39	chr11:34366600-34368600	Flanking Active TSS	HSMMtube	muscle
40	chr11:34366600-34368800	Enhancers	Duodenum Smooth Muscle	Duodenum
41	chr11:34366600-34369000	Enhancers	Colon Smooth Muscle	Colon
42	chr11:34366800-34368200	Enhancers	Brain Substantia Nigra	brain
43	chr11:34366800-34368400	Enhancers	Cortex derived primary cultured neurospheres	brain
44	chr11:34366800-34368400	Enhancers	Ovary	ovary
45	chr11:34366800-34368600	Enhancers	Brain Hippocampus Middle	brain
46	chr11:34366800-34368600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
47	chr11:34366800-34368600	Enhancers	Fetal Lung	lung
48	chr11:34367000-34368400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr11:34367000-34368400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr11:34367000-34368600	Flanking Active TSS	Stomach Smooth Muscle	stomach

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