Variant report

Variant	rs7116929
Chromosome Location	chr11:34348070-34348071
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:34346331..34348538-chr11:34354788..34356481,2	MCF-7	breast:
2	chr11:34345030..34348316-chr11:34348388..34351447,3	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11821949	0.80[AMR][1000 genomes]
rs56378837	0.90[AFR][1000 genomes]
rs58323950	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6484706	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7944118	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7947362	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757435	chr11:34220504-34370236	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759816	chr11:34220504-34370236	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv818809	chr11:34239730-34354076	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv2753052	chr11:34247462-34358300	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv897205	chr11:34248229-34507213	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv897207	chr11:34253683-34621004	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
7	nsv897208	chr11:34257064-34562247	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
8	nsv897209	chr11:34309519-34548906	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
9	nsv818810	chr11:34337564-34354076	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
10	esv2753225	chr11:34338342-34354865	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34336200-34358200	Weak transcription	Thymus	Thymus
2	chr11:34337800-34349000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:34339000-34349000	Weak transcription	Brain Anterior Caudate	brain
4	chr11:34339000-34357400	Weak transcription	Fetal Thymus	thymus
5	chr11:34340000-34353200	Weak transcription	Small Intestine	intestine
6	chr11:34340600-34349200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr11:34340800-34349000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr11:34340800-34352200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:34341000-34348600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr11:34341000-34348800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr11:34341000-34349000	Weak transcription	Pancreas	Pancrea
12	chr11:34341000-34352400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:34341200-34348400	Weak transcription	Left Ventricle	heart
14	chr11:34341200-34352200	Weak transcription	HSMM	muscle
15	chr11:34343600-34350800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr11:34344800-34348400	Weak transcription	Ovary	ovary
17	chr11:34346200-34348400	Weak transcription	Brain Hippocampus Middle	brain
18	chr11:34346200-34348400	Weak transcription	Fetal Lung	lung
19	chr11:34346200-34348800	Weak transcription	Liver	Liver
20	chr11:34346200-34348800	Weak transcription	Brain Angular Gyrus	brain
21	chr11:34346200-34349000	Weak transcription	Brain Cingulate Gyrus	brain
22	chr11:34346200-34349000	Weak transcription	Placenta	Placenta
23	chr11:34346200-34349400	Weak transcription	HSMMtube	muscle
24	chr11:34346400-34348800	Weak transcription	Brain Substantia Nigra	brain
25	chr11:34346400-34349000	Weak transcription	Adipose Nuclei	Adipose
26	chr11:34346600-34348400	Weak transcription	Fetal Muscle Trunk	muscle
27	chr11:34346600-34348400	Weak transcription	Psoas Muscle	Psoas
28	chr11:34346600-34348400	Weak transcription	Right Ventricle	heart
29	chr11:34346600-34348600	Weak transcription	Fetal Heart	heart
30	chr11:34346600-34348800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr11:34346600-34348800	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr11:34346600-34349000	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr11:34346600-34349000	Weak transcription	Right Atrium	heart
34	chr11:34346600-34351000	Weak transcription	Aorta	Aorta
35	chr11:34346600-34353800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr11:34347000-34348400	Weak transcription	Stomach Smooth Muscle	stomach
37	chr11:34347000-34349600	Weak transcription	Lung	lung
38	chr11:34347000-34349600	Weak transcription	A549	lung
39	chr11:34347000-34350800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr11:34347000-34355600	Weak transcription	GM12878-XiMat	blood
41	chr11:34347400-34349000	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr11:34347800-34354400	Enhancers	Fetal Stomach	stomach
43	chr11:34348000-34353200	Enhancers	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links