Variant report

Variant	rs11822228
Chromosome Location	chr11:62694824-62694825
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:62688187..62692436-chr11:62693524..62696676,4	K562	blood:
2	chr11:62691791..62695911-chr11:62696538..62699345,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168539	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1004836	1.00[EUR][1000 genomes]
rs11231293	1.00[EUR][1000 genomes]
rs11568630	1.00[EUR][1000 genomes]
rs11822063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11824018	1.00[EUR][1000 genomes]
rs11828150	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12293966	1.00[EUR][1000 genomes]
rs12295679	1.00[EUR][1000 genomes]
rs3793961	1.00[EUR][1000 genomes]
rs45438191	1.00[EUR][1000 genomes]
rs56966711	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915636	chr11:62016992-62713565	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1441 gene(s)	inside rSNPs	diseases
2	nsv532283	chr11:62201358-62863475	Enhancers Flanking Active TSS Genic enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1433 gene(s)	inside rSNPs	diseases
3	nsv1041770	chr11:62610353-62871767	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	263 gene(s)	inside rSNPs	diseases
4	esv34011	chr11:62652779-62993702	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:62692800-62695000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
2	chr11:62692800-62695000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
3	chr11:62692800-62695000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
4	chr11:62693000-62695000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
5	chr11:62693600-62695200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
6	chr11:62693800-62695000	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
7	chr11:62693800-62695000	Bivalent Enhancer	Fetal Intestine Small	intestine
8	chr11:62693800-62695000	Bivalent Enhancer	Placenta	Placenta
9	chr11:62693800-62695200	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
10	chr11:62694000-62695000	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
11	chr11:62694000-62695200	Enhancers	Pancreas	Pancrea
12	chr11:62694000-62695800	Bivalent Enhancer	Brain Germinal Matrix	brain
13	chr11:62694000-62695800	Bivalent Enhancer	Fetal Intestine Large	intestine
14	chr11:62694000-62697400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr11:62694000-62697600	Bivalent Enhancer	Fetal Muscle Leg	muscle
16	chr11:62694200-62695000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
17	chr11:62694200-62695000	Bivalent Enhancer	Fetal Stomach	stomach
18	chr11:62694200-62695200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
19	chr11:62694200-62695200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
20	chr11:62694200-62695200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
21	chr11:62694200-62695600	Weak transcription	Lung	lung
22	chr11:62694400-62696200	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr11:62694600-62695400	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr11:62694800-62695000	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr11:62694800-62695200	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
26	chr11:62694800-62695200	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
27	chr11:62694800-62695200	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
28	chr11:62694800-62695800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
29	chr11:62694800-62696000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
30	chr11:62694800-62696600	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell

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