Variant report

Variant	rs45438191
Chromosome Location	chr11:62763544-62763545
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1004836	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231293	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11568487	1.00[AMR][1000 genomes]
rs11568630	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11822063	1.00[EUR][1000 genomes]
rs11822228	1.00[EUR][1000 genomes]
rs11824018	1.00[EUR][1000 genomes]
rs11828150	1.00[EUR][1000 genomes]
rs12293966	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12295679	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3793961	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7109056	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532283	chr11:62201358-62863475	Enhancers Flanking Active TSS Genic enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1433 gene(s)	inside rSNPs	diseases
2	nsv1041770	chr11:62610353-62871767	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	263 gene(s)	inside rSNPs	diseases
3	esv34011	chr11:62652779-62993702	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:62752400-62763600	Weak transcription	Spleen	Spleen
2	chr11:62762800-62764400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:62763200-62764200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:62763400-62763600	Bivalent Enhancer	Fetal Muscle Trunk	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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