Variant report

Variant	rs11822525
Chromosome Location	chr11:15891299-15891300
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11023750	1.00[EUR][1000 genomes]
rs11023753	0.85[YRI][hapmap]
rs11820127	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11822469	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11823900	1.00[EUR][1000 genomes]
rs11828021	0.92[EUR][1000 genomes]
rs12281263	1.00[EUR][1000 genomes]
rs12364139	0.94[LWK][hapmap];0.88[MKK][hapmap];0.85[YRI][hapmap]
rs1440707	0.91[LWK][hapmap];0.88[MKK][hapmap];0.84[YRI][hapmap]
rs4757371	0.85[YRI][hapmap]
rs4757373	0.85[YRI][hapmap]
rs58213027	1.00[EUR][1000 genomes]
rs59629543	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7114894	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7115051	1.00[EUR][1000 genomes]
rs72862201	1.00[EUR][1000 genomes]
rs72864516	1.00[EUR][1000 genomes]
rs72864555	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832073	chr11:15822409-15984078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15886800-15892600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr11:15887400-15892600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:15887400-15892800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr11:15887600-15892000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr11:15890400-15897000	Weak transcription	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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