Variant report

Variant	rs72864555
Chromosome Location	chr11:15912176-15912177
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:15910536..15912312-chr11:15915422..15917800,2	MCF-7	breast:
2	chr11:15906360..15909550-chr11:15909837..15912358,3	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11023750	0.92[EUR][1000 genomes]
rs11820127	0.92[EUR][1000 genomes]
rs11822469	0.92[EUR][1000 genomes]
rs11822525	0.92[EUR][1000 genomes]
rs11823900	0.92[EUR][1000 genomes]
rs11828021	0.84[EUR][1000 genomes]
rs12281263	0.92[EUR][1000 genomes]
rs58213027	0.92[EUR][1000 genomes]
rs59629543	0.92[EUR][1000 genomes]
rs7114894	0.92[EUR][1000 genomes]
rs7115051	0.92[EUR][1000 genomes]
rs72862201	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72864516	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832073	chr11:15822409-15984078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15893600-15914000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:15906600-15914400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr11:15907200-15914600	Weak transcription	Left Ventricle	heart
4	chr11:15907600-15914400	Weak transcription	Fetal Brain Female	brain
5	chr11:15907600-15914400	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr11:15908200-15917800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr11:15909600-15912200	Enhancers	Ovary	ovary
8	chr11:15909800-15912400	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr11:15910000-15912200	Enhancers	Fetal Stomach	stomach
10	chr11:15910000-15912600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:15910000-15912600	Enhancers	NH-A	brain
12	chr11:15910000-15912800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr11:15910400-15912200	Enhancers	Right Atrium	heart
14	chr11:15910400-15922800	Weak transcription	Fetal Intestine Small	intestine
15	chr11:15910600-15913800	Weak transcription	Fetal Heart	heart
16	chr11:15910600-15914400	Weak transcription	Fetal Lung	lung
17	chr11:15911000-15912200	Enhancers	Brain Germinal Matrix	brain
18	chr11:15911000-15912400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr11:15911200-15912200	Enhancers	Muscle Satellite Cultured Cells	--
20	chr11:15911400-15912200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr11:15911400-15912400	Enhancers	Placenta	Placenta
22	chr11:15911400-15912400	Enhancers	HSMM	muscle
23	chr11:15911400-15912600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr11:15911400-15914800	Weak transcription	Stomach Mucosa	stomach
25	chr11:15911400-15916000	Weak transcription	Spleen	Spleen
26	chr11:15911600-15912600	Enhancers	Fetal Muscle Leg	muscle
27	chr11:15911600-15914200	Weak transcription	K562	blood
28	chr11:15911800-15912200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr11:15911800-15912200	Enhancers	Lung	lung
30	chr11:15911800-15912200	Enhancers	HSMMtube	muscle
31	chr11:15911800-15912400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr11:15911800-15912400	Enhancers	Fetal Brain Male	brain
33	chr11:15911800-15912400	Enhancers	Fetal Kidney	kidney
34	chr11:15911800-15912400	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr11:15911800-15912600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr11:15912000-15912400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr11:15912000-15912600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr11:15912000-15912600	Enhancers	Osteobl	bone
39	chr11:15912000-15914000	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr11:15912000-15914600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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