Variant report

Variant	rs11822577
Chromosome Location	chr11:121402085-121402086
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11218276	1.00[ASN][1000 genomes]
rs11218283	1.00[ASN][1000 genomes]
rs11605969	1.00[ASN][1000 genomes]
rs11820794	1.00[ASN][1000 genomes]
rs11827797	1.00[ASN][1000 genomes]
rs12362520	1.00[ASN][1000 genomes]
rs17337174	1.00[ASN][1000 genomes]
rs2134607	1.00[ASN][1000 genomes]
rs58391387	1.00[ASN][1000 genomes]
rs60410760	1.00[ASN][1000 genomes]
rs7101373	1.00[ASN][1000 genomes]
rs7108384	1.00[ASN][1000 genomes]
rs7124060	1.00[ASN][1000 genomes]
rs7128608	1.00[ASN][1000 genomes]
rs73595277	1.00[ASN][1000 genomes]
rs753780	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898427	chr11:121299288-121411041	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv522474	chr11:121356968-121436270	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv975233	chr11:121359656-121574786	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121385600-121418200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr11:121391400-121437200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:121392400-121414800	Weak transcription	Stomach Mucosa	stomach
4	chr11:121393400-121414200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr11:121393600-121415400	Weak transcription	Colonic Mucosa	Colon
6	chr11:121395000-121403000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr11:121395000-121404000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr11:121395200-121403000	Weak transcription	Thymus	Thymus
9	chr11:121395200-121414000	Weak transcription	Rectal Smooth Muscle	rectum
10	chr11:121395200-121414400	Weak transcription	Stomach Smooth Muscle	stomach
11	chr11:121395200-121434800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr11:121395400-121403000	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr11:121395400-121404000	Weak transcription	Brain Angular Gyrus	brain
14	chr11:121395400-121404600	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr11:121395400-121424600	Weak transcription	Gastric	stomach
16	chr11:121396200-121403000	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr11:121396400-121405000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr11:121396400-121414200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr11:121396400-121445000	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr11:121396600-121402400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr11:121396600-121404600	Weak transcription	Brain Anterior Caudate	brain
22	chr11:121396600-121405400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr11:121396600-121405600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr11:121396600-121405800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr11:121396600-121414200	Weak transcription	Pancreas	Pancrea
26	chr11:121396600-121437600	Strong transcription	Primary neutrophils fromperipheralblood	blood
27	chr11:121396800-121405000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr11:121396800-121414000	Weak transcription	Esophagus	oesophagus
29	chr11:121396800-121414200	Weak transcription	Spleen	Spleen
30	chr11:121396800-121414400	Weak transcription	Fetal Lung	lung
31	chr11:121396800-121415400	Weak transcription	Fetal Stomach	stomach
32	chr11:121396800-121417400	Weak transcription	Aorta	Aorta
33	chr11:121396800-121425400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr11:121397000-121434800	Weak transcription	Fetal Kidney	kidney
35	chr11:121399000-121443200	Strong transcription	Primary monocytes fromperipheralblood	blood
36	chr11:121399200-121408400	Strong transcription	HepG2	liver
37	chr11:121399600-121407800	Strong transcription	Rectal Mucosa Donor 29	rectum
38	chr11:121399600-121408000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr11:121400200-121403000	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr11:121400400-121404400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr11:121400600-121404000	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr11:121400800-121403200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr11:121400800-121408600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr11:121401000-121403600	Weak transcription	Fetal Thymus	thymus
45	chr11:121401200-121402200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr11:121401200-121402200	Weak transcription	Duodenum Mucosa	Duodenum
47	chr11:121401200-121403800	Strong transcription	Primary hematopoietic stem cells	blood
48	chr11:121401400-121402200	Weak transcription	Dnd41	blood
49	chr11:121401400-121403000	Strong transcription	Primary T helper cells PMA-I stimulated	--
50	chr11:121401400-121403800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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