Variant report

Variant	rs11823197
Chromosome Location	chr11:106856017-106856018
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17106238	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17106269	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17106297	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2883329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55699569	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55900807	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55911323	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56152703	1.00[AMR][1000 genomes]
rs58110753	1.00[AMR][1000 genomes]
rs7126776	1.00[AMR][1000 genomes]
rs7932239	1.00[AMR][1000 genomes]
rs7932724	1.00[AMR][1000 genomes]
rs7939110	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531938	chr11:106760733-107156814	Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106828400-106857400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr11:106833400-106857800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr11:106850800-106858600	Weak transcription	Fetal Stomach	stomach
4	chr11:106851200-106858800	Weak transcription	Ovary	ovary
5	chr11:106851200-106859400	Weak transcription	Pancreas	Pancrea
6	chr11:106854000-106857600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:106854400-106859400	Weak transcription	Fetal Muscle Leg	muscle
8	chr11:106855000-106856200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr11:106855000-106856600	Weak transcription	NHLF	lung
10	chr11:106855000-106859600	Weak transcription	Brain Cingulate Gyrus	brain
11	chr11:106855000-106861000	Weak transcription	Fetal Brain Male	brain
12	chr11:106855000-106868400	Weak transcription	Brain Angular Gyrus	brain
13	chr11:106855200-106857600	Weak transcription	Fetal Lung	lung
14	chr11:106855200-106858600	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr11:106855800-106858800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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