Variant report

Variant	rs55699569
Chromosome Location	chr11:106884565-106884566
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11823197	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17106238	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17106269	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17106297	1.00[AMR][1000 genomes]
rs2883329	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55900807	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55911323	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56152703	1.00[AMR][1000 genomes]
rs58110753	1.00[AMR][1000 genomes]
rs7126776	1.00[AMR][1000 genomes]
rs7932239	1.00[AMR][1000 genomes]
rs7932724	1.00[AMR][1000 genomes]
rs7939110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531938	chr11:106760733-107156814	Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106861600-106886200	Weak transcription	Fetal Brain Male	brain
2	chr11:106869000-106885400	Weak transcription	Fetal Lung	lung
3	chr11:106883400-106885400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr11:106883400-106885400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr11:106883400-106885400	Weak transcription	Fetal Heart	heart
6	chr11:106883400-106885600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr11:106883800-106886200	Weak transcription	A549	lung
8	chr11:106884000-106885400	Weak transcription	NH-A	brain
9	chr11:106884200-106884600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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