Variant report

Variant	rs11823687
Chromosome Location	chr11:84577299-84577300
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:84567200..84570703-chr11:84574977..84578515,4	MCF-7	breast:
2	chr11:84528411..84530417-chr11:84577098..84579531,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11820382	1.00[YRI][hapmap]
rs11821444	1.00[YRI][hapmap]
rs11823749	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs11823972	1.00[YRI][hapmap]
rs12786519	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12791729	0.85[CEU][hapmap];0.99[EUR][1000 genomes]
rs1943734	0.86[EUR][1000 genomes]
rs34180762	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34391330	0.89[EUR][1000 genomes]
rs35056500	0.86[EUR][1000 genomes]
rs35683266	0.92[EUR][1000 genomes]
rs4944499	0.81[GIH][hapmap];0.81[EUR][1000 genomes]
rs6592200	1.00[YRI][hapmap]
rs6592209	1.00[ASW][hapmap]
rs7106403	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7110559	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs71469659	0.92[EUR][1000 genomes]
rs7930306	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1045974	chr11:84187214-84708462	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1049964	chr11:84315563-84578721	Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1048051	chr11:84419442-84784233	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv541109	chr11:84419442-84784233	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv817205	chr11:84497319-84628963	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv898040	chr11:84524697-84600597	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	esv2760388	chr11:84541974-84577299	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv555625	chr11:84547441-84629013	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv555627	chr11:84547595-84581522	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv2757458	chr11:84556678-84593655	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv2759844	chr11:84556678-84593655	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84571000-84579400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:84576000-84577600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr11:84576000-84577800	Enhancers	NH-A	brain
4	chr11:84576200-84577400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr11:84576200-84577400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr11:84576200-84577400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr11:84576200-84577400	Enhancers	HSMM	muscle
8	chr11:84576200-84577400	Enhancers	Osteobl	bone
9	chr11:84576200-84577600	Enhancers	Muscle Satellite Cultured Cells	--
10	chr11:84576200-84577600	Enhancers	Hela-S3	cervix
11	chr11:84576200-84577600	Enhancers	HSMMtube	muscle
12	chr11:84576200-84577600	Enhancers	NHDF-Ad	bronchial
13	chr11:84576200-84577800	Enhancers	NHLF	lung
14	chr11:84576400-84577400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr11:84576400-84577400	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr11:84576400-84577400	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr11:84576400-84577600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr11:84576600-84577600	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr11:84576600-84577600	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr11:84576800-84577400	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr11:84576800-84577400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr11:84576800-84577600	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr11:84576800-84577600	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr11:84577000-84577600	Enhancers	H1 Cell Line	embryonic stem cell
25	chr11:84577000-84577600	Enhancers	Left Ventricle	heart
26	chr11:84577000-84577600	Enhancers	Psoas Muscle	Psoas
27	chr11:84577000-84577600	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr11:84577200-84577600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr11:84577200-84577600	Enhancers	Right Atrium	heart
30	chr11:84577200-84578400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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