Variant report

Variant	rs7106403
Chromosome Location	chr11:84566534-84566535
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11820382	1.00[YRI][hapmap]
rs11821444	1.00[YRI][hapmap]
rs11823687	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11823749	1.00[YRI][hapmap]
rs11823972	1.00[YRI][hapmap]
rs12786519	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12791729	0.85[CEU][hapmap];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1943734	0.86[EUR][1000 genomes]
rs34180762	1.00[EUR][1000 genomes]
rs34391330	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35056500	0.86[EUR][1000 genomes]
rs35683266	0.92[EUR][1000 genomes]
rs4944499	0.81[EUR][1000 genomes]
rs6592200	1.00[YRI][hapmap]
rs6592209	0.87[AFR][1000 genomes]
rs7110559	1.00[YRI][hapmap]
rs71469659	0.92[EUR][1000 genomes]
rs7930306	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:26 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1045974	chr11:84187214-84708462	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1049964	chr11:84315563-84578721	Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1048051	chr11:84419442-84784233	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv541109	chr11:84419442-84784233	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv898036	chr11:84420132-84576644	Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv817205	chr11:84497319-84628963	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv898040	chr11:84524697-84600597	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv555620	chr11:84530538-84568024	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv555621	chr11:84533831-84568024	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv468767	chr11:84536635-84571784	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv555622	chr11:84536635-84571784	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv8849	chr11:84536933-84571495	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv516146	chr11:84537908-84576644	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv555623	chr11:84538675-84568024	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv555624	chr11:84538675-84571784	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv1041517	chr11:84541962-84570167	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv1037946	chr11:84541962-84572435	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
19	esv2760388	chr11:84541974-84577299	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv1037058	chr11:84546379-84570167	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv1049832	chr11:84546379-84575375	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
22	nsv555625	chr11:84547441-84629013	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
23	nsv555626	chr11:84547595-84568024	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
24	nsv555627	chr11:84547595-84581522	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
25	esv2757458	chr11:84556678-84593655	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
26	esv2759844	chr11:84556678-84593655	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84564200-84566600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr11:84564600-84569200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr11:84564600-84569600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:84564800-84567600	Enhancers	HSMMtube	muscle
5	chr11:84564800-84569200	Enhancers	NHDF-Ad	bronchial
6	chr11:84565000-84567600	Enhancers	HMEC	breast
7	chr11:84565000-84567600	Enhancers	NHEK	skin
8	chr11:84565000-84568800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr11:84565000-84569200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr11:84565200-84571000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr11:84565400-84566600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr11:84565600-84567400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr11:84565600-84567800	Enhancers	HSMM	muscle
14	chr11:84565600-84570800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr11:84565800-84568000	Enhancers	NH-A	brain
16	chr11:84566000-84567400	Enhancers	Placenta Amnion	Placenta Amnion
17	chr11:84566000-84567800	Enhancers	NHLF	lung
18	chr11:84566000-84568000	Enhancers	Muscle Satellite Cultured Cells	--
19	chr11:84566000-84568200	Enhancers	Osteobl	bone
20	chr11:84566200-84566600	Enhancers	Fetal Heart	heart
21	chr11:84566200-84567200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr11:84566200-84567600	Enhancers	Ovary	ovary
23	chr11:84566400-84567400	Enhancers	ES-I3 Cell Line	embryonic stem cell

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