Variant report

Variant	rs11824853
Chromosome Location	chr11:102366930-102366931
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:102217635..102219637-chr11:102364748..102366957,2	K562	blood:
2	chr11:102258611..102261367-chr11:102365540..102367730,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000110330	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11826339	1.00[AMR][1000 genomes]
rs58874026	1.00[AMR][1000 genomes]
rs59728890	1.00[AMR][1000 genomes]
rs60961163	1.00[AMR][1000 genomes]
rs73591568	1.00[AMR][1000 genomes]
rs73591585	1.00[AMR][1000 genomes]
rs73593530	1.00[AMR][1000 genomes]
rs73593547	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035567	chr11:102264516-102431607	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv469990	chr11:102335609-102413943	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv556150	chr11:102335609-102415859	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv468854	chr11:102336617-102413943	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv556151	chr11:102336617-102413943	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102365600-102367000	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr11:102365600-102367200	Enhancers	Stomach Mucosa	stomach
3	chr11:102365800-102367200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:102366000-102367000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr11:102366400-102367000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr11:102366400-102367000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr11:102366400-102367000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr11:102366400-102367000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:102366400-102367000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr11:102366400-102367000	Enhancers	Placenta	Placenta
11	chr11:102366600-102367800	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr11:102366800-102367000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr11:102366800-102367000	Active TSS	Rectal Smooth Muscle	rectum
14	chr11:102366800-102367000	Enhancers	A549	lung
15	chr11:102366800-102367000	Enhancers	HepG2	liver
16	chr11:102366800-102367800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr11:102366800-102368000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr11:102366800-102368000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr11:102366800-102369000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr11:102366800-102369800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr11:102366800-102369800	Weak transcription	Colon Smooth Muscle	Colon
22	chr11:102366800-102370000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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