Variant report

Variant	rs11825568
Chromosome Location	chr11:73800887-73800888
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:73780866..73784002-chr11:73798180..73802078,6	MCF-7	breast:
2	chr11:73800042..73802110-chr11:73880491..73883383,2	MCF-7	breast:
3	chr11:73798903..73800889-chr11:73801297..73804030,2	K562	blood:
4	chr11:73798926..73801362-chr11:73893492..73896056,2	K562	blood:
5	chr11:73778180..73781840-chr11:73797440..73801034,4	MCF-7	breast:
6	chr11:73791960..73793657-chr11:73799383..73800978,2	MCF-7	breast:
7	chr11:73695027..73697891-chr11:73799212..73800903,2	K562	blood:

Variant related genes	Relation type
ENSG00000168014	Chromatin interaction
ENSG00000214517	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11236004	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11236006	0.81[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11236008	0.81[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11236028	0.87[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[ASN][1000 genomes]
rs11825974	0.94[ASN][1000 genomes]
rs15763	0.93[JPT][hapmap]
rs1626521	0.81[CEU][hapmap];0.93[JPT][hapmap]
rs1685354	0.93[JPT][hapmap]
rs1790400	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2632723	0.93[JPT][hapmap]
rs2734827	0.93[JPT][hapmap]
rs2848557	0.87[CEU][hapmap];0.93[JPT][hapmap]
rs4944880	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs530699	0.80[CHB][hapmap];0.93[JPT][hapmap]
rs555964	0.87[CEU][hapmap];0.93[JPT][hapmap];0.80[EUR][1000 genomes]
rs60647229	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs668514	0.93[JPT][hapmap]
rs699142	1.00[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72984831	0.88[ASN][1000 genomes]
rs72984885	0.84[ASN][1000 genomes]
rs72984886	0.84[ASN][1000 genomes]
rs7925988	0.81[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs826044	0.88[YRI][hapmap]
rs826054	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs826055	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs826057	1.00[CEU][hapmap];0.90[CHB][hapmap];0.87[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs826058	1.00[CEU][hapmap];0.90[CHB][hapmap];0.87[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs866650	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs869616	0.81[CEU][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11825568	UCP2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73753200-73804600	Weak transcription	Colonic Mucosa	Colon
2	chr11:73760000-73802600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr11:73777600-73818600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr11:73781800-73849200	Weak transcription	Stomach Mucosa	stomach
5	chr11:73782600-73823800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr11:73784200-73801000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr11:73785600-73803400	Weak transcription	NHDF-Ad	bronchial
8	chr11:73785600-73823600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr11:73787800-73811400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr11:73789800-73801000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr11:73794600-73823600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:73794800-73804200	Strong transcription	Brain Angular Gyrus	brain
13	chr11:73794800-73805400	Strong transcription	Cortex derived primary cultured neurospheres	brain
14	chr11:73794800-73806600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr11:73794800-73806600	Strong transcription	Fetal Lung	lung
16	chr11:73795000-73806000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr11:73795000-73806000	Strong transcription	Brain Anterior Caudate	brain
18	chr11:73795000-73806400	Strong transcription	Adipose Nuclei	Adipose
19	chr11:73795000-73806600	Strong transcription	Fetal Muscle Leg	muscle
20	chr11:73795000-73808600	Strong transcription	HUES64 Cell Line	embryonic stem cell
21	chr11:73795000-73817400	Strong transcription	Primary neutrophils fromperipheralblood	blood
22	chr11:73795000-73817600	Strong transcription	Primary B cells from cord blood	blood
23	chr11:73795200-73802400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr11:73795200-73805000	Strong transcription	HUES6 Cell Line	embryonic stem cell
25	chr11:73795200-73805800	Strong transcription	Duodenum Mucosa	Duodenum
26	chr11:73795200-73806000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr11:73795200-73806000	Strong transcription	Placenta	Placenta
28	chr11:73795200-73806400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
29	chr11:73795200-73806400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
30	chr11:73795200-73806400	Strong transcription	HSMMtube	muscle
31	chr11:73795200-73806600	Strong transcription	HUES48 Cell Line	embryonic stem cell
32	chr11:73795200-73807200	Strong transcription	Rectal Mucosa Donor 29	rectum
33	chr11:73795200-73814600	Strong transcription	Fetal Muscle Trunk	muscle
34	chr11:73795200-73814600	Strong transcription	Left Ventricle	heart
35	chr11:73795200-73814800	Strong transcription	Liver	Liver
36	chr11:73795200-73815200	Strong transcription	Rectal Mucosa Donor 31	rectum
37	chr11:73795200-73817600	Strong transcription	Primary T cells from cord blood	blood
38	chr11:73795200-73817600	Strong transcription	Primary T cells fromperipheralblood	blood
39	chr11:73795200-73818200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr11:73795200-73820600	Strong transcription	Primary T helper cells fromperipheralblood	blood
41	chr11:73795200-73823800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
42	chr11:73795400-73817800	Strong transcription	Primary B cells from peripheral blood	blood
43	chr11:73795600-73806000	Strong transcription	Brain Inferior Temporal Lobe	brain
44	chr11:73795800-73806400	Strong transcription	Fetal Brain Female	brain
45	chr11:73795800-73806600	Strong transcription	Hela-S3	cervix
46	chr11:73795800-73815000	Strong transcription	Duodenum Smooth Muscle	Duodenum
47	chr11:73795800-73817800	Strong transcription	Monocytes-CD14+_RO01746	blood
48	chr11:73796000-73807600	Strong transcription	Brain Hippocampus Middle	brain
49	chr11:73796000-73817800	Strong transcription	HSMM	muscle
50	chr11:73796400-73802000	Strong transcription	Spleen	Spleen

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